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Release v0.10.12
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althonos committed Apr 25, 2024
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34 changes: 22 additions & 12 deletions CHANGELOG.md
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Expand Up @@ -6,7 +6,17 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.


## [Unreleased]
[Unreleased]: https://github.com/althonos/pyhmmer/compare/v0.10.11...HEAD
[Unreleased]: https://github.com/althonos/pyhmmer/compare/v0.10.12...HEAD


## [v0.10.12] - 2024-04-25
[v0.10.12]: https://github.com/althonos/pyhmmer/compare/v0.10.11...v0.10.12

### Fixed
- `HMM.__setstate__` not properly extracting the cutoff from `pickle` state for some HMMs ([#67](https://github.com/althonos/pyhmmer/issues/67)).

### Changed
- Update and remove some test files to reduce size of distributed package data.


## [v0.10.11] - 2024-03-27
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- Compilation of Easel and HMMER code not using SSE4.1 extensions.


## [v0.10.10] - 2024-03-18
## [v0.10.10] - 2024-03-18 - YANKED
[v0.10.10]: https://github.com/althonos/pyhmmer/compare/v0.10.9...v0.10.10

### Fixed
- Implement `write` function for `fopencookie` with `off_t` instead of `off64_t` for compatibility.
- Fix handling of NULL buffers passed to `read` and `write` methods of `fopencookie`.


## [v0.10.9] - 2024-03-12
## [v0.10.9] - 2024-03-12 - YANKED
[v0.10.9]: https://github.com/althonos/pyhmmer/compare/v0.10.8...v0.10.9

### Fixed
- Reallocation issue causing segmentation faults in `nhmmer` with more than 64 sequences ([#62](https://github.com/althonos/pyhmmer/issues/62)).


## [v0.10.8] - 2024-03-06
## [v0.10.8] - 2024-03-06 - YANKED
[v0.10.8]: https://github.com/althonos/pyhmmer/compare/v0.10.7...v0.10.8

### Added
Expand All @@ -47,7 +57,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
- `SequenceFile` and `MSAFile` crashing with a segmentation fault when given the path to a folder rather than a file.


## [v0.10.7] - 2024-03-04
## [v0.10.7] - 2024-03-04 - YANKED
[v0.10.7]: https://github.com/althonos/pyhmmer/compare/v0.10.6...v0.10.7

### Added
Expand All @@ -59,7 +69,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
- `pyhmmer.hmmer` dispatchers possibly dead-locking on background thread errors ([#60](https://github.com/althonos/pyhmmer/issues/60)).


## [v0.10.6] - 2024-02-20
## [v0.10.6] - 2024-02-20 - YANKED
[v0.10.6]: https://github.com/althonos/pyhmmer/compare/v0.10.5...v0.10.6

### Added
Expand All @@ -73,7 +83,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
- Memory leak caused by alphabet allocation in `Pipeline._scan_loop_file`.


## [v0.10.5] - 2024-02-16
## [v0.10.5] - 2024-02-16 - YANKED
[v0.10.5]: https://github.com/althonos/pyhmmer/compare/v0.10.4...v0.10.5

### Added
Expand All @@ -93,7 +103,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
- Memory leak caused by string duplication in `__getbuffer__` methods of `Matrix` and `Vector` types.


## [v0.10.4] - 2023-10-29
## [v0.10.4] - 2023-10-29 - YANKED
[v0.10.4]: https://github.com/althonos/pyhmmer/compare/v0.10.3...v0.10.4

### Added
Expand All @@ -107,7 +117,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
- Syntax errors in type annotation files.


## [v0.10.3] - 2023-10-22
## [v0.10.3] - 2023-10-22 - YANKED
[v0.10.3]: https://github.com/althonos/pyhmmer/compare/v0.10.2...v0.10.3

### Added
Expand All @@ -125,14 +135,14 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
- Relax tolerance of HMM validation in `TraceAligner.align_traces`.


## [v0.10.2] - 2023-08-20
## [v0.10.2] - 2023-08-20 - YANKED
[v0.10.2]: https://github.com/althonos/pyhmmer/compare/v0.10.1...v0.10.2

### Fixed
- Invalid buffer write in `DigitalSequenceBlock.translate` ([#50](https://github.com/althonos/pyhmmer/issues/50)).


## [v0.10.1] - 2023-08-17
## [v0.10.1] - 2023-08-17 - YANKED
[v0.10.1]: https://github.com/althonos/pyhmmer/compare/v0.10.0...v0.10.1

### Added
Expand All @@ -143,7 +153,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
- `pyhmmer.plan7.HMM` constructor setting a consensus string forcefully.


## [v0.10.0] - 2023-08-16
## [v0.10.0] - 2023-08-16 - YANKED
[v0.10.0]: https://github.com/althonos/pyhmmer/compare/v0.9.0...v0.10.0

### Added
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2 changes: 1 addition & 1 deletion pyhmmer/__init__.py
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Expand Up @@ -32,7 +32,7 @@

__author__ = "Martin Larralde <martin.larralde@embl.de>"
__license__ = "MIT"
__version__ = "0.10.11"
__version__ = "0.10.12"
__all__ = [
"errors",
"easel",
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