0.4.8

Added

• Constructor arguments and properties to plan7.Pipeline to support bit score thresholds instead to filter top hits.
• Support for creating a SequenceFile and an MSAFile using a Python file-like object instead of only supporting filenames.
• Support for reading individual sequences from an MSA file with SequenceFile.
• TextMSA.alignment to access the actual alignment as a tuple of strings.
• Subtraction and division support for easel.Vector subclasses

Changed

• plan7.Cutoffs now support setting the bit score cutoffs, but requires both to be set or cleared at the same time.
• easel.Vector will always allocate some memory when created manually to avoid having a special empty case in every vector method.
• pyhmmer.easel.AllocationError now stores the size it failed to allocate, and the number of elements when allocating an array.

Fixed

• TextSequence.digitize will not raise a ValueError when the sequence contains invalid characters for the alphabet (previously was an UnexpectedError).