deploy: 62280fd

_sources/agenda.md

@@ -3,9 +3,9 @@
 This section presents the agenda for the Workshop.
 
 - Welcome and logistics 🗣️ (⏰ 10 min)
-- A short introduction to EOSC and its terminology (⏰ 10 min)
-- Discussion on current research practices and bottlenecks (⏰ 15 min) 
+- The European Open Science Cloud (EOSC) (⏰ 10 min)
 - FAIR and Open Science: an additional burden for scientists or an opportunity (⏰ 10 min)
+- Discussion on current research practices and bottlenecks (⏰ 15 min) 
 - Break 😌 (⏰ 15 min)
 - Getting started with EOSC (⏰ 20 min)
 - Work along session with an example (⏰ 30 min)

_sources/current.md

@@ -1,3 +1,39 @@
 # Discussion on current working practices and bottlenecks
 
+## Identifying current practices
 
+As a whole classroom or in small groups (3-4) depending on the total number of participants.
+
+The main goal of this exercise is to understand the current practices of researchers (how they effectively work in their lab) with a goal to express the main bottlenecks.
+
+- You can use the figure below that sketches the research life cycle:
+
+![research life cycle sketch](images/researchdatalifecycle.jpg)
+
+You can also use the slide below as a guidance of the different categories to consider:
+
+![Earth Scientist working practices](images/earth_scientists.png)
+
+And you can also consider the following list of questions:
+
+- How do you on-board newcomers in your team?
+- How do you retain knowledge and practices when a postdoc, PhD, staff leaves your team? Have you established off-boarding procedures?
+- Have you established specific guidelines in your team or are you using the general guidelines of your university/organization?
+- Has your University/organization providing tools and services to facilitate the publication of data, software, workflows, etc.?
+- What data are you using in a regular basis? 
+- Where do you store data you are currently using in a project? Do you need to apply for storage quota and if yes how do you proceed?
+- What software/methods are you using? Are they developed within your team or are you using commercial or Open source software maintained by others? How do you report bugs or feature requests?
+- Do you work on your laptop only? Or on University/organisation servers? Or on the cloud?
+- Are you using computational and/or storage resources managed by your University, national provider or commercial cloud providers? Are you able to install any software/libraries you would need? How much time do you wait to get it available?
+- When publishing scientific papers, do you also link to data, software, workflows? 
+- Where do you publish your data, software, workflows, presentations, etc.?
+- Is your University/organisation taking into account all your contributions or only scientific papers published in some journals?
+- How do you collaborate? With internal collaborators? With external collaborators? 
+
+And list the biggest issues in your work (we give some examples below):
+- Too much administrative work and not enough time for my own research;
+- Only scientific papers are counted by my managements so I cannot afford to waste time on FAIR and Open Science;
+- ...
+
+
+## Can O 

_sources/terminology.md

@@ -1,6 +1,6 @@
-# A short introduction to EOSC and its terminology
+# The European Open Science Cloud (EOSC)
 
-## EOSC
+## EOSC presented by EOSC
 
  **EOSC**: European Open Science Cloud. *The European Open Science Cloud is a European Commission initiative aiming at developing an infrastructure providing its users with services promoting open science practices (Wikipedia).*
 
@@ -17,7 +17,7 @@
 
 - **EOSC**: European Open Science Cloud
 
-- **EOSC portal**: The [EOSC Portal](https://eosc-portal.eu/) is part of the EOSC implementation roadmap as one of the expected “federating core” services contributing to the implementation of the “Access and interface” action line. It has been conceived to provide a European delivery channel connecting the demand-side and the supply-side of the EOSC and all its stakeholders. [Learn more](https://eosc-portal.eu/about/eosc-portal)
+- **EOSC portal**: The [EOSC Portal](https://eosc-portal.eu/) is part of the EOSC implementation roadmap as one of the expected “federating core services” contributing to the implementation of the “Access and interface” action line. It has been conceived to provide a European delivery channel connecting the demand-side and the supply-side of the EOSC and all its stakeholders. [Learn more](https://eosc-portal.eu/about/eosc-portal)
 
 - **Marketplace**: The [Marketplace](https://marketplace.eosc-portal.eu) is the EOSC Portal tool where researchers can discover, order and access the services, analytical tools, data management tools, storage and computing services they need for their work.
 

agenda.html

@@ -65,7 +65,7 @@
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     <link rel="search" title="Search" href="search.html" />
-    <link rel="next" title="A short introduction to EOSC and its terminology" href="terminology.html" />
+    <link rel="next" title="The European Open Science Cloud (EOSC)" href="terminology.html" />
     <link rel="prev" title="Code of Conduct and community participation guidelines" href="coc.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
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@@ -179,9 +179,9 @@
         <ul class="current nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="coc.html">Code of Conduct and community participation guidelines</a></li>
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">Agenda for the session</a></li>
-<li class="toctree-l1"><a class="reference internal" href="terminology.html">A short introduction to EOSC and its terminology</a></li>
-<li class="toctree-l1"><a class="reference internal" href="current.html">Discussion on current working practices and bottlenecks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="terminology.html">The European Open Science Cloud (EOSC)</a></li>
 <li class="toctree-l1"><a class="reference internal" href="fair_os.html">FAIR and Open Science</a></li>
+<li class="toctree-l1"><a class="reference internal" href="current.html">Discussion on current working practices and bottlenecks</a></li>
 <li class="toctree-l1"><a class="reference internal" href="registration.html">Getting started with EOSC</a></li>
 <li class="toctree-l1"><a class="reference internal" href="example.html">Work along session with an example</a></li>
 <li class="toctree-l1"><a class="reference internal" href="exercises.html">Try it out yourself</a></li>
@@ -390,9 +390,9 @@ <h1>Agenda for the session<a class="headerlink" href="#agenda-for-the-session" t
 <p>This section presents the agenda for the Workshop.</p>
 <ul class="simple">
 <li><p>Welcome and logistics 🗣️ (⏰ 10 min)</p></li>
-<li><p>A short introduction to EOSC and its terminology (⏰ 10 min)</p></li>
-<li><p>Discussion on current research practices and bottlenecks (⏰ 15 min)</p></li>
+<li><p>The European Open Science Cloud (EOSC) (⏰ 10 min)</p></li>
 <li><p>FAIR and Open Science: an additional burden for scientists or an opportunity (⏰ 10 min)</p></li>
+<li><p>Discussion on current research practices and bottlenecks (⏰ 15 min)</p></li>
 <li><p>Break 😌 (⏰ 15 min)</p></li>
 <li><p>Getting started with EOSC (⏰ 20 min)</p></li>
 <li><p>Work along session with an example (⏰ 30 min)</p></li>
@@ -448,7 +448,7 @@ <h1>Agenda for the session<a class="headerlink" href="#agenda-for-the-session" t
        title="next page">
       <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">A short introduction to EOSC and its terminology</p>
+        <p class="prev-next-title">The European Open Science Cloud (EOSC)</p>
       </div>
       <i class="fa-solid fa-angle-right"></i>
     </a>

coc.html

@@ -179,9 +179,9 @@
         <ul class="current nav bd-sidenav">
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">Code of Conduct and community participation guidelines</a></li>
 <li class="toctree-l1"><a class="reference internal" href="agenda.html">Agenda for the session</a></li>
-<li class="toctree-l1"><a class="reference internal" href="terminology.html">A short introduction to EOSC and its terminology</a></li>
-<li class="toctree-l1"><a class="reference internal" href="current.html">Discussion on current working practices and bottlenecks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="terminology.html">The European Open Science Cloud (EOSC)</a></li>
 <li class="toctree-l1"><a class="reference internal" href="fair_os.html">FAIR and Open Science</a></li>
+<li class="toctree-l1"><a class="reference internal" href="current.html">Discussion on current working practices and bottlenecks</a></li>
 <li class="toctree-l1"><a class="reference internal" href="registration.html">Getting started with EOSC</a></li>
 <li class="toctree-l1"><a class="reference internal" href="example.html">Work along session with an example</a></li>
 <li class="toctree-l1"><a class="reference internal" href="exercises.html">Try it out yourself</a></li>

collaboration.html

@@ -179,9 +179,9 @@
         <ul class="current nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="coc.html">Code of Conduct and community participation guidelines</a></li>
 <li class="toctree-l1"><a class="reference internal" href="agenda.html">Agenda for the session</a></li>
-<li class="toctree-l1"><a class="reference internal" href="terminology.html">A short introduction to EOSC and its terminology</a></li>
-<li class="toctree-l1"><a class="reference internal" href="current.html">Discussion on current working practices and bottlenecks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="terminology.html">The European Open Science Cloud (EOSC)</a></li>
 <li class="toctree-l1"><a class="reference internal" href="fair_os.html">FAIR and Open Science</a></li>
+<li class="toctree-l1"><a class="reference internal" href="current.html">Discussion on current working practices and bottlenecks</a></li>
 <li class="toctree-l1"><a class="reference internal" href="registration.html">Getting started with EOSC</a></li>
 <li class="toctree-l1"><a class="reference internal" href="example.html">Work along session with an example</a></li>
 <li class="toctree-l1"><a class="reference internal" href="exercises.html">Try it out yourself</a></li>

current.html

@@ -65,8 +65,8 @@
     <script>DOCUMENTATION_OPTIONS.pagename = 'current';</script>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
-    <link rel="next" title="FAIR and Open Science" href="fair_os.html" />
-    <link rel="prev" title="A short introduction to EOSC and its terminology" href="terminology.html" />
+    <link rel="next" title="Getting started with EOSC" href="registration.html" />
+    <link rel="prev" title="FAIR and Open Science" href="fair_os.html" />
   <meta name="viewport" content="width=device-width, initial-scale=1"/>
   <meta name="docsearch:language" content="en"/>
   </head>
@@ -179,9 +179,9 @@
         <ul class="current nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="coc.html">Code of Conduct and community participation guidelines</a></li>
 <li class="toctree-l1"><a class="reference internal" href="agenda.html">Agenda for the session</a></li>
-<li class="toctree-l1"><a class="reference internal" href="terminology.html">A short introduction to EOSC and its terminology</a></li>
-<li class="toctree-l1 current active"><a class="current reference internal" href="#">Discussion on current working practices and bottlenecks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="terminology.html">The European Open Science Cloud (EOSC)</a></li>
 <li class="toctree-l1"><a class="reference internal" href="fair_os.html">FAIR and Open Science</a></li>
+<li class="toctree-l1 current active"><a class="current reference internal" href="#">Discussion on current working practices and bottlenecks</a></li>
 <li class="toctree-l1"><a class="reference internal" href="registration.html">Getting started with EOSC</a></li>
 <li class="toctree-l1"><a class="reference internal" href="example.html">Work along session with an example</a></li>
 <li class="toctree-l1"><a class="reference internal" href="exercises.html">Try it out yourself</a></li>
@@ -360,7 +360,9 @@
   </button>
 `);
 </script>
-
+<label class="sidebar-toggle secondary-toggle btn btn-sm" for="__secondary"title="Toggle secondary sidebar" data-bs-placement="bottom" data-bs-toggle="tooltip">
+    <span class="fa-solid fa-list"></span>
+</label>
 </div></div>
 
     </div>
@@ -376,6 +378,15 @@ <h1>Discussion on current working practices and bottlenecks</h1>
     <div id="print-main-content">
         <div id="jb-print-toc">
 
+            <div>
+                <h2> Contents </h2>
+            </div>
+            <nav aria-label="Page">
+                <ul class="visible nav section-nav flex-column">
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#identifying-current-practices">Identifying current practices</a></li>
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#can-o">Can O</a></li>
+</ul>
+            </nav>
         </div>
     </div>
 </div>
@@ -387,6 +398,42 @@ <h1>Discussion on current working practices and bottlenecks</h1>
 
   <section class="tex2jax_ignore mathjax_ignore" id="discussion-on-current-working-practices-and-bottlenecks">
 <h1>Discussion on current working practices and bottlenecks<a class="headerlink" href="#discussion-on-current-working-practices-and-bottlenecks" title="Permalink to this heading">#</a></h1>
+<section id="identifying-current-practices">
+<h2>Identifying current practices<a class="headerlink" href="#identifying-current-practices" title="Permalink to this heading">#</a></h2>
+<p>As a whole classroom or in small groups (3-4) depending on the total number of participants.</p>
+<p>The main goal of this exercise is to understand the current practices of researchers (how they effectively work in their lab) with a goal to express the main bottlenecks.</p>
+<ul class="simple">
+<li><p>You can use the figure below that sketches the research life cycle:</p></li>
+</ul>
+<p><img alt="research life cycle sketch" src="_images/researchdatalifecycle.jpg" /></p>
+<p>You can also use the slide below as a guidance of the different categories to consider:</p>
+<p><img alt="Earth Scientist working practices" src="_images/earth_scientists.png" /></p>
+<p>And you can also consider the following list of questions:</p>
+<ul class="simple">
+<li><p>How do you on-board newcomers in your team?</p></li>
+<li><p>How do you retain knowledge and practices when a postdoc, PhD, staff leaves your team? Have you established off-boarding procedures?</p></li>
+<li><p>Have you established specific guidelines in your team or are you using the general guidelines of your university/organization?</p></li>
+<li><p>Has your University/organization providing tools and services to facilitate the publication of data, software, workflows, etc.?</p></li>
+<li><p>What data are you using in a regular basis?</p></li>
+<li><p>Where do you store data you are currently using in a project? Do you need to apply for storage quota and if yes how do you proceed?</p></li>
+<li><p>What software/methods are you using? Are they developed within your team or are you using commercial or Open source software maintained by others? How do you report bugs or feature requests?</p></li>
+<li><p>Do you work on your laptop only? Or on University/organisation servers? Or on the cloud?</p></li>
+<li><p>Are you using computational and/or storage resources managed by your University, national provider or commercial cloud providers? Are you able to install any software/libraries you would need? How much time do you wait to get it available?</p></li>
+<li><p>When publishing scientific papers, do you also link to data, software, workflows?</p></li>
+<li><p>Where do you publish your data, software, workflows, presentations, etc.?</p></li>
+<li><p>Is your University/organisation taking into account all your contributions or only scientific papers published in some journals?</p></li>
+<li><p>How do you collaborate? With internal collaborators? With external collaborators?</p></li>
+</ul>
+<p>And list the biggest issues in your work (we give some examples below):</p>
+<ul class="simple">
+<li><p>Too much administrative work and not enough time for my own research;</p></li>
+<li><p>Only scientific papers are counted by my managements so I cannot afford to waste time on FAIR and Open Science;</p></li>
+<li><p>…</p></li>
+</ul>
+</section>
+<section id="can-o">
+<h2>Can O<a class="headerlink" href="#can-o" title="Permalink to this heading">#</a></h2>
+</section>
 </section>
 
     <script type="text/x-thebe-config">
@@ -420,20 +467,20 @@ <h1>Discussion on current working practices and bottlenecks<a class="headerlink"
 
 <div class="prev-next-area">
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-       href="terminology.html"
+       href="fair_os.html"
        title="previous page">
       <i class="fa-solid fa-angle-left"></i>
       <div class="prev-next-info">
         <p class="prev-next-subtitle">previous</p>
-        <p class="prev-next-title">A short introduction to EOSC and its terminology</p>
+        <p class="prev-next-title">FAIR and Open Science</p>
       </div>
     </a>
     <a class="right-next"
-       href="fair_os.html"
+       href="registration.html"
        title="next page">
       <div class="prev-next-info">
         <p class="prev-next-subtitle">next</p>
-        <p class="prev-next-title">FAIR and Open Science</p>
+        <p class="prev-next-title">Getting started with EOSC</p>
       </div>
       <i class="fa-solid fa-angle-right"></i>
     </a>
@@ -444,7 +491,21 @@ <h1>Discussion on current working practices and bottlenecks<a class="headerlink"
 
 
 
-                <div class="bd-sidebar-secondary bd-toc"></div>
+                <div class="bd-sidebar-secondary bd-toc"><div class="sidebar-secondary-items sidebar-secondary__inner">
+
+
+  <div class="sidebar-secondary-item">
+  <div class="page-toc tocsection onthispage">
+    <i class="fa-solid fa-list"></i> Contents
+  </div>
+  <nav class="bd-toc-nav page-toc">
+    <ul class="visible nav section-nav flex-column">
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#identifying-current-practices">Identifying current practices</a></li>
+<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#can-o">Can O</a></li>
+</ul>
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+
+</div></div>
 
 
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example.html

@@ -179,9 +179,9 @@
         <ul class="current nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="coc.html">Code of Conduct and community participation guidelines</a></li>
 <li class="toctree-l1"><a class="reference internal" href="agenda.html">Agenda for the session</a></li>
-<li class="toctree-l1"><a class="reference internal" href="terminology.html">A short introduction to EOSC and its terminology</a></li>
-<li class="toctree-l1"><a class="reference internal" href="current.html">Discussion on current working practices and bottlenecks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="terminology.html">The European Open Science Cloud (EOSC)</a></li>
 <li class="toctree-l1"><a class="reference internal" href="fair_os.html">FAIR and Open Science</a></li>
+<li class="toctree-l1"><a class="reference internal" href="current.html">Discussion on current working practices and bottlenecks</a></li>
 <li class="toctree-l1"><a class="reference internal" href="registration.html">Getting started with EOSC</a></li>
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">Work along session with an example</a></li>
 <li class="toctree-l1"><a class="reference internal" href="exercises.html">Try it out yourself</a></li>