Remove initial_change when CreateTableTransaction apply table updat…

…es on an empty metadata (#1219)

* make table metadata without validaiton

* update deletes test

* remove info

* add deprecation message

* revert lib version updates

* remove initial_changes usage in code

* move test to integration

* fix typo

* update error string

pyiceberg/catalog/__init__.py

@@ -1011,4 +1011,4 @@ def _empty_table_metadata() -> TableMetadata:
         Returns:
             TableMetadata: An empty TableMetadata instance.
         """
-        return TableMetadataV1(location="", last_column_id=-1, schema=Schema())
+        return TableMetadataV1.model_construct(last_column_id=-1, schema=Schema())

pyiceberg/table/__init__.py

@@ -703,22 +703,22 @@ def _initial_changes(self, table_metadata: TableMetadata) -> None:
 
         schema: Schema = table_metadata.schema()
         self._updates += (
-            AddSchemaUpdate(schema_=schema, last_column_id=schema.highest_field_id, initial_change=True),
+            AddSchemaUpdate(schema_=schema, last_column_id=schema.highest_field_id),
             SetCurrentSchemaUpdate(schema_id=-1),
         )
 
         spec: PartitionSpec = table_metadata.spec()
         if spec.is_unpartitioned():
-            self._updates += (AddPartitionSpecUpdate(spec=UNPARTITIONED_PARTITION_SPEC, initial_change=True),)
+            self._updates += (AddPartitionSpecUpdate(spec=UNPARTITIONED_PARTITION_SPEC),)
         else:
-            self._updates += (AddPartitionSpecUpdate(spec=spec, initial_change=True),)
+            self._updates += (AddPartitionSpecUpdate(spec=spec),)
         self._updates += (SetDefaultSpecUpdate(spec_id=-1),)
 
         sort_order: Optional[SortOrder] = table_metadata.sort_order_by_id(table_metadata.default_sort_order_id)
         if sort_order is None or sort_order.is_unsorted:
-            self._updates += (AddSortOrderUpdate(sort_order=UNSORTED_SORT_ORDER, initial_change=True),)
+            self._updates += (AddSortOrderUpdate(sort_order=UNSORTED_SORT_ORDER),)
         else:
-            self._updates += (AddSortOrderUpdate(sort_order=sort_order, initial_change=True),)
+            self._updates += (AddSortOrderUpdate(sort_order=sort_order),)
         self._updates += (SetDefaultSortOrderUpdate(sort_order_id=-1),)
 
         self._updates += (

pyiceberg/table/metadata.py

@@ -587,5 +587,21 @@ def parse_obj(data: Dict[str, Any]) -> TableMetadata:
         else:
             raise ValidationError(f"Unknown format version: {format_version}")
 
+    @staticmethod
+    def _construct_without_validation(table_metadata: TableMetadata) -> TableMetadata:
+        """Construct table metadata from an existing table without performing validation.
+
+        This method is useful during a sequence of table updates when the model needs to be re-constructed but is not yet ready for validation.
+        """
+        if table_metadata.format_version is None:
+            raise ValidationError(f"Missing format-version in TableMetadata: {table_metadata}")
+
+        if table_metadata.format_version == 1:
+            return TableMetadataV1.model_construct(**dict(table_metadata))
+        elif table_metadata.format_version == 2:
+            return TableMetadataV2.model_construct(**dict(table_metadata))
+        else:
+            raise ValidationError(f"Unknown format version: {table_metadata.format_version}")
+
 
 TableMetadata = Annotated[Union[TableMetadataV1, TableMetadataV2], Field(discriminator="format_version")]  # type: ignore

pyiceberg/table/update/__init__.py

@@ -18,7 +18,6 @@
 
 import uuid
 from abc import ABC, abstractmethod
-from copy import copy
 from datetime import datetime
 from functools import singledispatch
 from typing import TYPE_CHECKING, Any, Dict, Generic, List, Literal, Optional, Tuple, TypeVar, Union
@@ -45,6 +44,7 @@
     transform_dict_value_to_str,
 )
 from pyiceberg.utils.datetime import datetime_to_millis
+from pyiceberg.utils.deprecated import deprecation_notice
 from pyiceberg.utils.properties import property_as_int
 
 if TYPE_CHECKING:
@@ -90,7 +90,13 @@ class AddSchemaUpdate(IcebergBaseModel):
     # This field is required: https://github.com/apache/iceberg/pull/7445
     last_column_id: int = Field(alias="last-column-id")
 
-    initial_change: bool = Field(default=False, exclude=True)
+    initial_change: bool = Field(
+        default=False,
+        exclude=True,
+        deprecated=deprecation_notice(
+            deprecated_in="0.8.0", removed_in="0.9.0", help_message="CreateTableTransaction can work without this field"
+        ),
+    )
 
 
 class SetCurrentSchemaUpdate(IcebergBaseModel):
@@ -104,7 +110,13 @@ class AddPartitionSpecUpdate(IcebergBaseModel):
     action: Literal["add-spec"] = Field(default="add-spec")
     spec: PartitionSpec
 
-    initial_change: bool = Field(default=False, exclude=True)
+    initial_change: bool = Field(
+        default=False,
+        exclude=True,
+        deprecated=deprecation_notice(
+            deprecated_in="0.8.0", removed_in="0.9.0", help_message="CreateTableTransaction can work without this field"
+        ),
+    )
 
 
 class SetDefaultSpecUpdate(IcebergBaseModel):
@@ -118,7 +130,13 @@ class AddSortOrderUpdate(IcebergBaseModel):
     action: Literal["add-sort-order"] = Field(default="add-sort-order")
     sort_order: SortOrder = Field(alias="sort-order")
 
-    initial_change: bool = Field(default=False, exclude=True)
+    initial_change: bool = Field(
+        default=False,
+        exclude=True,
+        deprecated=deprecation_notice(
+            deprecated_in="0.8.0", removed_in="0.9.0", help_message="CreateTableTransaction can work without this field"
+        ),
+    )
 
 
 class SetDefaultSortOrderUpdate(IcebergBaseModel):
@@ -267,11 +285,10 @@ def _(
     elif update.format_version == base_metadata.format_version:
         return base_metadata
 
-    updated_metadata_data = copy(base_metadata.model_dump())
-    updated_metadata_data["format-version"] = update.format_version
+    updated_metadata = base_metadata.model_copy(update={"format_version": update.format_version})
 
     context.add_update(update)
-    return TableMetadataUtil.parse_obj(updated_metadata_data)
+    return TableMetadataUtil._construct_without_validation(updated_metadata)
 
 
 @_apply_table_update.register(SetPropertiesUpdate)
@@ -306,7 +323,7 @@ def _(update: AddSchemaUpdate, base_metadata: TableMetadata, context: _TableMeta
 
     metadata_updates: Dict[str, Any] = {
         "last_column_id": update.last_column_id,
-        "schemas": [update.schema_] if update.initial_change else base_metadata.schemas + [update.schema_],
+        "schemas": base_metadata.schemas + [update.schema_],
     }
 
     context.add_update(update)
@@ -336,11 +353,11 @@ def _(update: SetCurrentSchemaUpdate, base_metadata: TableMetadata, context: _Ta
 @_apply_table_update.register(AddPartitionSpecUpdate)
 def _(update: AddPartitionSpecUpdate, base_metadata: TableMetadata, context: _TableMetadataUpdateContext) -> TableMetadata:
     for spec in base_metadata.partition_specs:
-        if spec.spec_id == update.spec.spec_id and not update.initial_change:
+        if spec.spec_id == update.spec.spec_id:
             raise ValueError(f"Partition spec with id {spec.spec_id} already exists: {spec}")
 
     metadata_updates: Dict[str, Any] = {
-        "partition_specs": [update.spec] if update.initial_change else base_metadata.partition_specs + [update.spec],
+        "partition_specs": base_metadata.partition_specs + [update.spec],
         "last_partition_id": max(
             max([field.field_id for field in update.spec.fields], default=0),
             base_metadata.last_partition_id or PARTITION_FIELD_ID_START - 1,
@@ -448,7 +465,7 @@ def _(update: AddSortOrderUpdate, base_metadata: TableMetadata, context: _TableM
     context.add_update(update)
     return base_metadata.model_copy(
         update={
-            "sort_orders": [update.sort_order] if update.initial_change else base_metadata.sort_orders + [update.sort_order],
+            "sort_orders": base_metadata.sort_orders + [update.sort_order],
         }
     )
 

pyiceberg/utils/deprecated.py

@@ -41,14 +41,17 @@ def new_func(*args: Any, **kwargs: Any) -> Any:
     return decorator
 
 
+def deprecation_notice(deprecated_in: str, removed_in: str, help_message: Optional[str]) -> str:
+    """Return a deprecation notice."""
+    return f"Deprecated in {deprecated_in}, will be removed in {removed_in}. {help_message}"
+
+
 def deprecation_message(deprecated_in: str, removed_in: str, help_message: Optional[str]) -> None:
     """Mark properties or behaviors as deprecated.
 
     Adding this will result in a warning being emitted.
     """
-    message = f"Deprecated in {deprecated_in}, will be removed in {removed_in}. {help_message}"
-
-    _deprecation_warning(message)
+    _deprecation_warning(deprecation_notice(deprecated_in, removed_in, help_message))
 
 
 def _deprecation_warning(message: str) -> None:

tests/integration/test_writes/test_writes.py

@@ -45,6 +45,7 @@
 from pyiceberg.partitioning import PartitionField, PartitionSpec
 from pyiceberg.schema import Schema
 from pyiceberg.table import TableProperties
+from pyiceberg.table.sorting import SortDirection, SortField, SortOrder
 from pyiceberg.transforms import DayTransform, HourTransform, IdentityTransform
 from pyiceberg.types import (
     DateType,
@@ -738,7 +739,7 @@ def test_write_and_evolve(session_catalog: Catalog, format_version: int) -> None
 def test_create_table_transaction(catalog: Catalog, format_version: int) -> None:
     if format_version == 1 and isinstance(catalog, RestCatalog):
         pytest.skip(
-            "There is a bug in the REST catalog (maybe server side) that prevents create and commit a staged version 1 table"
+            "There is a bug in the REST catalog image (https://github.com/apache/iceberg/issues/8756) that prevents create and commit a staged version 1 table"
         )
 
     identifier = f"default.arrow_create_table_transaction_{catalog.name}_{format_version}"
@@ -787,6 +788,62 @@ def test_create_table_transaction(catalog: Catalog, format_version: int) -> None
     assert len(tbl.scan().to_arrow()) == 6
 
 
+@pytest.mark.integration
+@pytest.mark.parametrize("format_version", [1, 2])
+@pytest.mark.parametrize("catalog", [pytest.lazy_fixture("session_catalog_hive"), pytest.lazy_fixture("session_catalog")])
+def test_create_table_with_non_default_values(catalog: Catalog, table_schema_with_all_types: Schema, format_version: int) -> None:
+    if format_version == 1 and isinstance(catalog, RestCatalog):
+        pytest.skip(
+            "There is a bug in the REST catalog image (https://github.com/apache/iceberg/issues/8756) that prevents create and commit a staged version 1 table"
+        )
+
+    identifier = f"default.arrow_create_table_transaction_with_non_default_values_{catalog.name}_{format_version}"
+    identifier_ref = f"default.arrow_create_table_transaction_with_non_default_values_ref_{catalog.name}_{format_version}"
+
+    try:
+        catalog.drop_table(identifier=identifier)
+    except NoSuchTableError:
+        pass
+
+    try:
+        catalog.drop_table(identifier=identifier_ref)
+    except NoSuchTableError:
+        pass
+
+    iceberg_spec = PartitionSpec(*[
+        PartitionField(source_id=2, field_id=1001, transform=IdentityTransform(), name="integer_partition")
+    ])
+
+    sort_order = SortOrder(*[SortField(source_id=2, transform=IdentityTransform(), direction=SortDirection.ASC)])
+
+    txn = catalog.create_table_transaction(
+        identifier=identifier,
+        schema=table_schema_with_all_types,
+        partition_spec=iceberg_spec,
+        sort_order=sort_order,
+        properties={"format-version": format_version},
+    )
+    txn.commit_transaction()
+
+    tbl = catalog.load_table(identifier)
+
+    tbl_ref = catalog.create_table(
+        identifier=identifier_ref,
+        schema=table_schema_with_all_types,
+        partition_spec=iceberg_spec,
+        sort_order=sort_order,
+        properties={"format-version": format_version},
+    )
+
+    assert tbl.format_version == tbl_ref.format_version
+    assert tbl.schema() == tbl_ref.schema()
+    assert tbl.schemas() == tbl_ref.schemas()
+    assert tbl.spec() == tbl_ref.spec()
+    assert tbl.specs() == tbl_ref.specs()
+    assert tbl.sort_order() == tbl_ref.sort_order()
+    assert tbl.sort_orders() == tbl_ref.sort_orders()
+
+
 @pytest.mark.integration
 @pytest.mark.parametrize("format_version", [1, 2])
 def test_table_properties_int_value(