- a apptainer for the phylogenomics
- it contains all the applications combined in a single container for the phylogenomics.
- it incldues orthofinder, astral, trimal, alignmentGO, raxml and clipkit.
- all the applications required for the genome analysis and genome or gene based phylogenomics.
apptainer exec phylogenomics.def
Given an folder of the fasta file you can invoke the apptainer as
apptainer run phylogenomics.sif orthofinder PATH-FASTA-FOLDER
apptainer run phylogenomics.sif astral -h
apptainer run phylogenomics.sif trimal -h
apptainer run phylogenomics.sif alignmentGO -h
apptainer run clipkit -h
Gaurav Sablok