docker file and entrypoint

Dockerfile

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+FROM continuumio/miniconda3
+
+WORKDIR /app
+
+# Create the environment:
+COPY environment.yml .
+RUN conda env create -f environment.yml --name catalogbuilder
+
+# Make RUN commands use the new environment:
+RUN echo "conda activate myenv" >> ~/.bashrc
+SHELL ["/bin/bash", "--login", "-c"]
+
+# The code to run when container is started:
+ENTRYPOINT ["./entrypoint.sh"]
+

entrypoint.sh

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+#!/bin/bash --login
+# The --login ensures the bash configuration is loaded,
+# enabling Conda.
+
+# Temporarily disable strict mode and activate conda:
+conda activate catalogbuilder 
+