cleanup

dynamo/plot/dynamics.py

@@ -2709,7 +2709,7 @@ def dynamics(
                 elif experiment_type == "coassay":
                     pass  # show protein velocity (steady state and the Gamma distribution model)
     # g.autofmt_xdate(rotation=-30, ha='right')
-    return save_show_ret("dynamic", save_show_or_return, save_kwargs, g)
+    return save_show_ret("dynamics", save_show_or_return, save_kwargs, g)
 
 
 def dynamics_(

dynamo/plot/least_action_path.py

@@ -165,4 +165,4 @@ def lap_min_time(
                 # scatters(adata, basis=basis, color=color, ax=axes[i, j], **kwargs)
                 # axes[i, j].scatter(*i[:, [x, y]].T, c=map2color(j))
 
-        return save_show_ret("kinetic_curves", save_show_or_return, save_kwargs, None)
+        return save_show_ret("kinetic_curves", save_show_or_return, save_kwargs)

dynamo/plot/scVectorField.py

@@ -1044,7 +1044,7 @@ def cell_wise_vectors(
             )
         ax.set_facecolor(background)
 
-    return save_show_ret("cell_wise_vector", save_show_or_return, save_kwargs, axes_list, projection != "3d")
+    return save_show_ret("cell_wise_vector", save_show_or_return, save_kwargs, axes_list, tight = projection != "3d")
 
 
 @docstrings.with_indent(4)
@@ -1734,7 +1734,7 @@ def streamplot_2d(ax):
             ax = axes_list[i]
             streamplot_2d(ax)
 
-    return save_show_ret("stream_plot", save_show_or_return, save_kwargs, axes_list)
+    return save_show_ret("streamline_plot", save_show_or_return, save_kwargs, axes_list)
 
 
 # refactor line_conv_integration

dynamo/plot/utils.py

@@ -15,7 +15,6 @@
 import pandas as pd
 from matplotlib.lines import Line2D
 from matplotlib.patches import Patch
-from matplotlib.axes import Axes
 from scipy.spatial import Delaunay
 
 from ..configuration import _themes, reset_rcParams
@@ -1693,18 +1692,18 @@ def save_show_ret(
             as its parameters. save_kwargs modifies those keys according to your needs. Defaults to {}.
         ret_value: value to be returned if save_show_or_return equals "return" or "all".
             - Note that functions in heatmaps.py don't use save_show_or_return to determine if anything's returned.
-        tight: because cell_wise_vectors_3d() and cell_wise_vectors() in scVectorField.py do not call plt.tight_layout()
-        adjust: because scatters.py, state_graph.py, and time_series.py potentially call plt.subplots_adjust()
+        tight: because cell_wise_vectors_3d() and cell_wise_vectors() in scVectorField.py do not call plt.tight_layout().
+        adjust: scatters.py, state_graph.py, and time_series.py potentially call plt.subplots_adjust().
             - Note that some functions, such as scatters(), pass in a string rather than a boolean.
-        background: because bubble() in markers.py and scatters() in scatters.py use this to see if reset_rcParams() is called
+        background: bubble() in markers.py/scatters() in scatters.py use this to see if reset_rcParams() is called.
 
     Returns:
         None would be returned by default. If `save_show_or_return` is set to be `"return"` or `"all"`, the matplotlib
         axis of the generated figure would be returned.
 
     Notes regarding save_show_or_return sections in functions that are not replaced with save_show_ret(): 
         - arcPlot()/nxvizPlot() in networks.py: uses plt.autoscale() or nv_ax.draw() in the first 2 IF statements.
-        - plot_3d_streamtube() in streamtube.py/animate_fates() in fate.py uses a different dictionary format than s_kwargs
+        - plot_3d_streamtube() in streamtube.py/animate_fates() in fate.py uses a different dictionary format than s_kwargs.
     """
     if save_show_or_return in ["save", "both", "all"]:
         s_kwargs = {
@@ -1744,13 +1743,11 @@ def save_show_ret(
             reset_rcParams()
         return ret_value
     else:
-        #Functionally this is unnecessary but adding it is better for readability.
         return None
         #Unnessary because type hint handles cases where save_show_or_return is not accepted options.
         #raise NotImplementedError('Invalid "save_show_or_return".') (connectivity.py)
 
 
-
 def retrieve_plot_save_path(
     path: Optional[str] = None,
     prefix: Optional[str] = None,