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1. flatironinstitute/inferelator flatironinstitute/inferelator Public

   Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.

   Python 45 12

2. GreshamLab/supirfactor-dynamical GreshamLab/supirfactor-dynamical Public

   Build dynamical deep models for transcriptional biophysics

   Python 1

3. flatironinstitute/sparse_dot flatironinstitute/sparse_dot Public

   Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication

   Python 72 10

4. flatironinstitute/inferelator-prior flatironinstitute/inferelator-prior Public

   Gene regulatory network inference using DNA-binding motifs and chromatin accessibility data.

   Python 8 2

5. flatironinstitute/inferelator-velocity flatironinstitute/inferelator-velocity Public

   Calculate dynamic (time-dependent) latent parameters from single-cell expression data

   Python 2

6. ScHINY ScHINY Public

   Shiny scripts for summary SS data

   R 1