update ubuntu version (#3)

* update ubuntu version

* fix desktop

* remove screensaver

chart/values.yaml

@@ -8,7 +8,7 @@ ssh:
  enabled: true
  image:
  name: astronomycommons/jupyterhub-ssh
- tag: 0.0.7
+ tag: 0.1.0
  hostname: ssh
  config:
  jump:
@@ -191,7 +191,7 @@ jupyterhub:
  - 22
  image: 
  name: astronomycommons/public-hub-singleuser
- tag: 0.6.1
+ tag: 0.7.0
  pullPolicy: Always
  # assigns the notebook pod the service account called jupyter-spark-serviceaccount in the k8s cluster
  # this service account is created if rbac.enabled is set to true in this Helm chart

images/notebook/Dockerfile

@@ -1,4 +1,4 @@
-FROM jupyterhub/k8s-singleuser-sample:1.1.3
+FROM quay.io/jupyter/base-notebook:ubuntu-22.04 
 
 # Add RUN statements to install packages as the $NB_USER defined in the base images.
 
@@ -37,7 +37,7 @@ RUN apt-get install -y --fix-missing \
  openssh-server \
  htop
 
-# Install Desktop
+# Install Desktop https://github.com/jupyterhub/jupyter-remote-desktop-proxy
 RUN apt-get install -y --fix-missing \
  dbus-x11 \
  xfce4 \
@@ -46,10 +46,15 @@ RUN apt-get install -y --fix-missing \
  xfce4-settings \
  xorg \
  xubuntu-icon-theme \
+ tigervnc-standalone-server \
+ tigervnc-xorg-extension \
+ # Install web browser
  firefox \
  # Disable creation of Music, Documents, etc.. directories
  # ref: https://unix.stackexchange.com/questions/268720/who-is-creating-documents-video-pictures-etc-in-home-directory
  && apt-get remove -y xdg-user-dirs \
+ # Disable screensaver/lock screen
+ && apt-get remove -y xfce4-screensaver \
  # Disable the Applications|Log Out menu item in XFCE
  # ref: https://github.com/yuvipanda/jupyter-desktop-server/issues/16
  && rm -f /usr/share/applications/xfce4-session-logout.desktop
@@ -68,7 +73,8 @@ RUN groupadd -g 996 admin \
  # get sudoers config from file on NFS
  && echo "#includedir /home/admin/etc/sudoers.d" >> /etc/sudoers
 
-
+RUN mkdir -p /opt/conda \
+ && mkdir -p /opt/axs
 # Update conda permissions
 RUN chown -R admin:admin /opt
 
@@ -85,7 +91,7 @@ ENV PATH $PATH:$SPARK_HOME/bin:$SPARK_HOME/sbin
 RUN cd /tmp \
  # Download AXS
  && wget -q -O axs-distribution.tar.gz https://github.com/astronomy-commons/axs/releases/download/${AXS_VERSION}/axs-${AXS_VERSION}.tgz \
- && mkdir $SPARK_HOME \
+ && mkdir -p $SPARK_HOME \
  && tar xf axs-distribution.tar.gz --strip 1 -C $SPARK_HOME \
  && rm axs-distribution.tar.gz \
  # Install required jars for Spark
@@ -101,49 +107,15 @@ RUN cd /tmp \
  # Postgres connector
  && curl -O -s https://jdbc.postgresql.org/download/postgresql-42.5.1.jar
 
-# Install mamba
-RUN conda install --quiet --yes -c conda-forge mamba
-
-# Install packages from main conda repository
+# Install conda packages
 RUN mamba install --quiet --yes \
- # Install AXS dependencies: pyarrow, numpy, pandas, healpy
- 'pyarrow' \
- 'numpy' \
- 'pandas' \
- 'healpy' \  
- # pytables for Pandas, allows reading of hdf5 files
- 'pytables' \
- # plotting
- 'matplotlib' \
- # pulling demo notebooks
- 'nbgitpuller' \
- # interacting with K8s cluster
- 'python-kubernetes' \
- # Dask
- 'dask'
-
-# Install packages from conda forge
-RUN mamba install --quiet --yes -c conda-forge \
- # server proxy extension
- 'jupyter-server-proxy' \
- # resource usage extension
- 'jupyter-resource-usage'
-
-# Install jupyter-desktop-server
-RUN mamba install -c manics websockify \
- && pip install git+https://github.com/mjuric/jupyter-desktop-server
-
-# Install packages with pip
-RUN python -m pip install \
- jupyterlab-topbar \
- jupyterlab-system-monitor \
- nbgitpuller \
- dask_kubernetes \
- adlfs
-
-# Install labextensions
-RUN jupyter labextension install \
- jupyterlab-topbar-text
+ pytables \
+ nb_conda_kernels \
+ websockify
+
+# Install Python requirements
+COPY requirements.txt requirements.txt
+RUN python -m pip install -r requirements.txt
 
 # Clean Conda
 RUN conda clean --all -f -y

images/notebook/requirements.txt

@@ -0,0 +1,18 @@
+jupyter-server-proxy
+jupyter-resource-usage
+jupyter-remote-desktop-proxy
+jupyterlab-topbar-text
+jupyterlab-logout
+jupyterlab-theme-toggler
+nbgitpuller
+adlfs
+pyarrow
+numpy
+pandas
+healpy
+matplotlib
+python-kubernetes
+dask
+dask-labextension
+dask_kubernetes
+ipywidgets

images/notebook/scripts/entrypoint.sh

@@ -31,7 +31,8 @@ case "$1" in
  *)
  source /usr/local/bin/pre-start-source.sh
  export CONTAINER_TYPE="notebook"
- CMD=("/usr/local/bin/start-notebook.sh"
+ CMD=("/usr/local/bin/start.sh"
+ "/usr/local/bin/start-notebook.sh"
  "${@:2}")
  ;;
 esac

images/ssh/Dockerfile

@@ -1,4 +1,4 @@
-FROM ubuntu:18.04
+FROM ubuntu:22.04
 
 USER root
 RUN apt-get -y update