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@at-cg

ATCG

Algorithmic Techniques for Computational Genomics

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  1. PanAligner PanAligner Public

    Long read aligner for cyclic and acyclic pangenome graphs

    C 36 4

  2. mm2-plus mm2-plus Public

    Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)

    C 27 2

  3. minichain minichain Public

    Long-read aligner to pangenome graphs

    C 26 3

  4. RAFT RAFT Public

    C++ 21 1

  5. ChainX ChainX Public

    Anchor chaining method for nucleotide sequences

    C++ 8 2

  6. containX containX Public

    Contained read analysis for string graph construction during de novo genome assembly

    C++ 5 1

Repositories

Showing 10 of 12 repositories
  • at-cg.github.io Public

    PI/Lab website

    at-cg/at-cg.github.io’s past year of commit activity
    SCSS 2 MIT 1 0 0 Updated Dec 24, 2024
  • ACM-Winter-School-2024-Demos Public

    Hands-on demo to understand biological application of Burrows Wheeler Transform / FM Index

    at-cg/ACM-Winter-School-2024-Demos’s past year of commit activity
    1 0 0 0 Updated Dec 21, 2024
  • mm2-plus Public

    Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)

    at-cg/mm2-plus’s past year of commit activity
    C 27 2 0 0 Updated Dec 6, 2024
  • PHI Public

    Pangenome graph-based genome inference

    at-cg/PHI’s past year of commit activity
    Python 5 0 0 0 Updated Oct 30, 2024
  • CGProb Public

    Counting coverage gaps

    at-cg/CGProb’s past year of commit activity
    C++ 3 1 0 0 Updated Oct 4, 2024
  • RAFT Public
    at-cg/RAFT’s past year of commit activity
    C++ 21 1 2 0 Updated Aug 22, 2024
  • minichain Public

    Long-read aligner to pangenome graphs

    at-cg/minichain’s past year of commit activity
    C 26 3 1 0 Updated May 20, 2024
  • PanAligner Public

    Long read aligner for cyclic and acyclic pangenome graphs

    at-cg/PanAligner’s past year of commit activity
    C 36 4 1 0 Updated Dec 20, 2023
  • containX Public

    Contained read analysis for string graph construction during de novo genome assembly

    at-cg/containX’s past year of commit activity
    C++ 5 1 0 0 Updated Apr 5, 2023
  • MMC Public

    Minimizer counting and analysis

    at-cg/MMC’s past year of commit activity
    C++ 2 1 0 0 Updated Oct 7, 2022
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