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read input BAM/CRAM #245

read input BAM/CRAM

read input BAM/CRAM #245

Workflow file for this run

# Run installation checks
name: install
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
install:
runs-on: ubuntu-20.04
strategy:
matrix:
python-version: [3.9]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install flake8 pytest pypandoc
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Install GWASpy
run: |
python setup.py sdist
pip3 install dist/gwaspy*
- name: Check modules
run: |
preimp_qc --help
pca --help
imputation --help
phasing --help