Use number of samples to estimate disk space for merging imputed files #254
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# Run installation checks | |
name: install | |
on: | |
push: | |
branches: [ main ] | |
pull_request: | |
branches: [ main ] | |
jobs: | |
install: | |
runs-on: ubuntu-20.04 | |
strategy: | |
matrix: | |
python-version: [3.9] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install flake8 pytest pypandoc | |
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
- name: Install GWASpy | |
run: | | |
python setup.py sdist | |
pip3 install dist/gwaspy* | |
- name: Check modules | |
run: | | |
preimp_qc --help | |
pca --help | |
imputation --help | |
phasing --help |