minor syntax fix

atgu · Feb 14, 2024 · 870c523 · 870c523
1 parent 1ff64f2
commit 870c523
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/gwaspy/phasing/shapeit5_phase.py b/gwaspy/phasing/shapeit5_phase.py
@@ -45,7 +45,7 @@ def annotate_vcf(
  )
 
  j.command(f"""
- bcftools +fill-tags {vcf['vcf']} -Ou -- -t AN,AC -o {j.annotated_vcf['vcf']}
+ bcftools +fill-tags {vcf['vcf']} -Ou -o {j.annotated_vcf['vcf']} -- -t AN,AC
  bcftools index {j.annotated_vcf['vcf']} --output {j.annotated_vcf['index']} --threads {ncpu}
  """)