another syntax fix

atgu · Feb 14, 2024 · d4507bd · d4507bd
1 parent 23493a5
commit d4507bd
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/gwaspy/phasing/shapeit5_phase.py b/gwaspy/phasing/shapeit5_phase.py
@@ -68,7 +68,7 @@ def phase_common(
  --map /root/gwaspy/resources/maps/b38/{chrom}.b38.gmap.gz \
  --output {j.phased_common_chunk['bcf']} \
  --thread {ncpu-1} \
- --log {j.phased_common_chunk['chunk.log']} \
+ --log {j.phased_common_chunk['log']} \
  --filter-maf {maf} \
  {f'--pedigree {pedigree}' if pedigree else ''} \
  --region {region}