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temporarily increase storage buffer
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This is temporary, I increased the buffer to handle large target datasets (10K+ samples). Working on finding an automatic way of estimating storage.
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LindoNkambule committed Jun 14, 2024
1 parent c5d4c93 commit e5d6987
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion gwaspy/imputation/impute5_impute.py
Original file line number Diff line number Diff line change
Expand Up @@ -163,7 +163,7 @@ def concatenate_imputed_chunks(
]

# Concatenate imputed chunks
disk_size = int(round(20.0 + 3.0 * vcf_size + ((1.0 + 2.0 * n_samples/n_panel_samples) * ref_size)))
disk_size = int(round(130.0 + 3.0 * vcf_size + ((1.0 + 2.0 * n_samples/n_panel_samples) * ref_size)))
concatenate_imputed_chunks(
b=batch,
chunks_list=imputed_chunks,
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