Merge pull request #176 from atorus-research/release_prep_1-2-0

Release prep 1 2 0

.Rbuildignore

@@ -23,3 +23,4 @@
 ^Jenkinsfile$
 ^rsconnect$
 ^data-raw$
+^scratch.R$

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: Tplyr
 Title: A Traceability Focused Grammar of Clinical Data Summary
-Version: 1.1.0.9000
+Version: 1.2.0
 Authors@R: 
     c(
     person(given = "Eli",
@@ -34,6 +34,10 @@ Authors@R:
            family = "Chen",
            email = "shiyu.chen@atorusresearch.com",
            role = "ctb"),
+    person(given = "Oleksii",
+           family = "Mikryukov",
+           email = "alex.mikryukov@atorusresearch.com",
+           role = "ctb"),
     person(given = "Atorus Research LLC",
            role = "cph")
     )

NEWS.md

@@ -1,3 +1,18 @@
+# Tplyr 1.2.0
+- Resolve #62 Add data vignette data into the package (thanks for the suggestion @thebioengineer)
+- Resolve #74 Add an example of piping in set_pop_data
+- Resolve #83 Add the `add_missing_subjects()` function 
+- Resolve #84 Add `set_limit_data_by()` function
+- Resolve #111, #148 Allow ellipsis argument unpacking outside of `add_layer()`
+- Resolve #129 Add `collapse_row_labels()` function
+- Resolve #134 Clarify how population data works to trigger denominators
+- Resolve #75, #146, #166 Fix nested count layer handling where one inner layer value exists in multiple outer layer groups
+- Resolve #21, #152 Fix handling of Inf, -Inf in desc layer for min and max
+- Resolve #154 Fix namespace scoping for execution of Tplyr tables within non-global environments
+- Resolve #155 Dead code clean-up
+- Resolve #170 Add `replace_leading_whitespace()` post-processing function
+- Resolve #173 Fix nested count layer sort variable behavior when using by variables
+
 # Tplyr 1.1.0
 - This release incorporate parenthesis hugging across all layers (#117)
 - New functions `apply_conditional_formats()`, `str_extract_fmt_group()` and `str_extract_num()`

R/layer_templates.R

@@ -177,7 +177,7 @@ get_layer_templates <- function() {
 #'   target, by, and where parameters.
 #' @param add_params Additional parameters passed into layer modifier functions.
 #'   These arguments are specified in a template within curly brackets such as
-#'   {param}. Supply as a named list, where the element name is the parameter.
+#'   \{param\}. Supply as a named list, where the element name is the parameter.
 #'
 #' @family Layer Templates
 #' @rdname layer_templates

cran-comments.md

@@ -1,9 +1,9 @@
-## Submission 1.0.2
-* Bug fix identified in Tplyr 1.0.1
+## Submission 1.2.0
+* Several bug fixes and the addition of new functions `add_missing_subjects()`, `set_limit_data_by()`, `collapse_row_labels()`, and `replace_leading_whitespace()`
 
 ## Test Environments
 
-* Local Ubuntu 18.04.4 devtools::check
+* Local Ubuntu 22.04.3 devtools::check
 * Latest Ubuntu CI with latest tidyverse
 * Github release action with windows, linux, and osx check
 * RHub Check

vignettes/metadata.Rmd

@@ -134,7 +134,7 @@ cat(c("tplyr_adsl %>%\n",
 
 So we get get metadata around a result cell, and we can get the exact results from a result cell. You just need a row ID and a column name. But - what does that get you? You can query your tables - and that's great. But how do you _use_ that.
 
-The idea behind this is really to support [Shiny](https://shiny.rstudio.com/). Consider this minimal application. Click any of the result cells within the table and see what happens.
+The idea behind this is really to support [Shiny](https://shiny.posit.co/). Consider this minimal application. Click any of the result cells within the table and see what happens.
 
 
 ```{r, out.width=850, out.extra='style="border: 1px solid #464646;" allowfullscreen="" allow="autoplay"', echo=FALSE}