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Version 2.0.2 #1060

Merged
merged 572 commits into from
Aug 1, 2023
Merged

Version 2.0.2 #1060

merged 572 commits into from
Aug 1, 2023
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Jun 29, 2022

  1. maint

    dengdifan committed Jun 29, 2022
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Commits on Jun 30, 2022

  1. Add reference for pSMAC #609

    benjamc committed Jun 30, 2022
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  2. Rename example file

    benjamc committed Jun 30, 2022
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  3. Added roadmap to readme

    renesass committed Jun 30, 2022
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  4. Prettification

    renesass committed Jun 30, 2022
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  5. Add result merger

    benjamc committed Jun 30, 2022
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  6. Reformat with black

    benjamc committed Jun 30, 2022
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  7. Delete unnecessary import

    benjamc committed Jun 30, 2022
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  8. Fix typing

    benjamc committed Jun 30, 2022
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  10. Add test for ResultMerger

    benjamc committed Jun 30, 2022
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  11. Fix docstring

    benjamc committed Jun 30, 2022
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  12. Get runhistory and trajectory from pSMAC run

    Via the result merger. Searchers rundirs and
    merges found runhistories and calculates a
    new trajectory.
    benjamc committed Jun 30, 2022
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  13. Get trajectory

    benjamc committed Jun 30, 2022
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  14. Add regex to requirements

    benjamc committed Jun 30, 2022
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Commits on Jul 4, 2022

  1. Fixed MO cache problem

    renesass committed Jul 4, 2022
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Commits on Jul 5, 2022

  1. Fix MO tests

    renesass committed Jul 5, 2022
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  2. Fixing MO in AbstractRacer

    renesass committed Jul 5, 2022
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  3. Accepting ints

    renesass committed Jul 5, 2022
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  5. Fix mypi

    renesass committed Jul 5, 2022
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  6. Bugfix

    renesass committed Jul 5, 2022
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  7. Make mypi happy

    renesass committed Jul 5, 2022
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  8. Fix tests

    renesass committed Jul 5, 2022
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  9. Make format

    renesass committed Jul 5, 2022
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Commits on Jul 6, 2022

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  2. A lot of restructuring

    renesass committed Jul 6, 2022
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  3. Solve importings

    renesass committed Jul 6, 2022
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  4. Solve importings

    renesass committed Jul 6, 2022
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  5. Fixing, fixing, fixing, ...

    renesass committed Jul 6, 2022
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  6. Fixing, fixing, fixing, ...

    renesass committed Jul 6, 2022
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  7. Fixing, fixing, fixing, ...

    renesass committed Jul 6, 2022
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  8. Fixing, fixing, fixing, ...

    renesass committed Jul 6, 2022
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  9. Fixing, fixing, fixing, ...

    renesass committed Jul 6, 2022
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  10. Fixing, fixing, fixing, ...

    renesass committed Jul 6, 2022
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  11. Fixing, fixing, fixing, ...

    renesass committed Jul 6, 2022
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  12. Fixing, fixing, fixing, ...

    renesass committed Jul 6, 2022
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  13. Fixing, fixing, fixing, ...

    renesass committed Jul 6, 2022
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  14. Updated changelog

    renesass committed Jul 6, 2022
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  15. Still fixing :)

    renesass committed Jul 6, 2022
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  16. fix docstrings

    dengdifan committed Jul 6, 2022
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Commits on Jul 7, 2022

  1. Change directory of tests

    benjamc committed Jul 7, 2022
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  2. Fix ambiguous variable

    benjamc committed Jul 7, 2022
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  3. Del newlines

    benjamc committed Jul 7, 2022
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  4. fix mypy

    dengdifan committed Jul 7, 2022
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  5. mypy and doc fix

    dengdifan committed Jul 7, 2022
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  6. Removed int type checking

    renesass committed Jul 7, 2022
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  7. fix tests

    dengdifan committed Jul 7, 2022
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  8. Always return List of incs

    benjamc committed Jul 7, 2022
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  9. fix path issue in example

    dengdifan committed Jul 7, 2022
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  10. maint boing facade

    dengdifan committed Jul 7, 2022
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  11. Better docstring

    renesass committed Jul 7, 2022
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  13. Removed import

    renesass committed Jul 7, 2022
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  14. Merge pull request #872 from automl/fix_mo_cache

    Fix Multi-Objective cache
    renesass authored Jul 7, 2022
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  15. Prepare BOinG (#730)

    renesass committed Jul 7, 2022
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  16. Return only one incumbent

    benjamc committed Jul 7, 2022
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  17. Configuration menu
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  18. Update example

    benjamc committed Jul 7, 2022
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  19. Update docstring

    benjamc committed Jul 7, 2022
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  20. Remove legacy function

    benjamc committed Jul 7, 2022
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  21. Update to new signature

    benjamc committed Jul 7, 2022
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  22. Update changelog.md

    benjamc committed Jul 7, 2022
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  23. Format black

    benjamc committed Jul 7, 2022
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  24. Update test

    Carolin Benjamins committed Jul 7, 2022
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  25. Please pre-commit

    Carolin Benjamins committed Jul 7, 2022
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  26. Merge development

    renesass committed Jul 7, 2022
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  27. Merge pSMAC update (#821)

    renesass committed Jul 7, 2022
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  28. Fix tests

    renesass committed Jul 7, 2022
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Commits on Jul 11, 2022

  1. Fix typos

    benjamc authored Jul 11, 2022
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  2. Format black

    benjamc committed Jul 11, 2022
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Commits on Jul 14, 2022

  1. Updated text

    renesass committed Jul 14, 2022
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  2. Increased version

    renesass committed Jul 14, 2022
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Commits on Oct 12, 2022

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  2. Improved readme

    renesass committed Oct 12, 2022
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  3. SMAC logo 50%

    renesass committed Oct 12, 2022
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  4. SMAC logo 50%

    renesass committed Oct 12, 2022
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  5. Removed dev-2.0

    renesass committed Oct 12, 2022
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Commits on Oct 18, 2022

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  2. Fixing docs latest tag

    renesass committed Oct 18, 2022
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  3. Fixing docs latest tag

    renesass committed Oct 18, 2022
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  4. First steps new intensifier

    renesass committed Oct 18, 2022
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  5. Make it work again

    renesass committed Oct 18, 2022
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Commits on Oct 19, 2022

  1. Test issues

    renesass committed Oct 19, 2022
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  2. FIX formatting

    KEggensperger committed Oct 19, 2022
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  3. Link to old documentation

    renesass committed Oct 19, 2022
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Commits on Oct 25, 2022

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  2. ADD enable parego in unittests

    KEggensperger authored and mfeurer committed Oct 25, 2022
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  3. FIX formatting

    KEggensperger authored and mfeurer committed Oct 25, 2022
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  4. Fix unit tests

    mfeurer committed Oct 25, 2022
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  5. Add annotation

    mfeurer committed Oct 25, 2022
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  6. corrected log prob for tophat prior

    Eric Kalosa-Kenyon committed Oct 25, 2022
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Commits on Oct 26, 2022

  1. Fixed mypy

    renesass committed Oct 26, 2022
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  3. Fixed tests

    renesass committed Oct 26, 2022
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  4. Fix mypy

    renesass committed Oct 26, 2022
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  5. Merge pull request #885 from automl/FIX_parego

    Fix parego
    renesass authored Oct 26, 2022
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  6. Merge pull request #887 from ekalosak/main

    Corrected log prob for tophat prior
    renesass authored Oct 26, 2022
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  7. Configuration menu
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  8. Enabled all tests again

    renesass committed Oct 26, 2022
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  9. Make version an env

    renesass committed Oct 26, 2022
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  10. Added last version to docs

    renesass committed Oct 26, 2022
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  11. Global variable fix

    renesass committed Oct 26, 2022
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Commits on Dec 7, 2022

  1. New Intensifier Implementation (#888)

    - Completely reimplemented the intensifiers (including Successive Halving and Hyperband): All intensifiers support multi-fidelity, multi-objective and multi-threading by nature now.
    - Expected behaviour for ask-and-tell interface ensured (also for Successive Halving).
    - Continuing a run is now fully supported.
    - Added more examples.
    - Updated documentation based on new implementation.
    renesass authored Dec 7, 2022
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  2. First benchmark steps

    renesass committed Dec 7, 2022
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  3. Added a warning

    renesass committed Dec 7, 2022
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Commits on Dec 12, 2022

  1. Set xi to 0.01

    renesass committed Dec 12, 2022
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Commits on Dec 14, 2022

  1. Working version of benchmark

    renesass committed Dec 14, 2022
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  2. Changed requirements

    renesass committed Dec 14, 2022
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Commits on Dec 15, 2022

  1. Changed xi back to 0.0 again

    renesass committed Dec 15, 2022
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  2. No duplicate budgets

    renesass committed Dec 15, 2022
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Commits on Dec 19, 2022

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  2. Fixed tests

    renesass committed Dec 19, 2022
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Commits on Dec 20, 2022

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  2. Configuration menu
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  3. Make format

    renesass committed Dec 20, 2022
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  4. Configuration menu
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  5. Finished benchmark

    renesass committed Dec 20, 2022
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  6. Added benchmark source files

    renesass committed Dec 20, 2022
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  7. Configuration menu
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  8. Improved runhistory API

    renesass committed Dec 20, 2022
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  9. Fixed typo (#894)

    PascalIversen authored Dec 20, 2022
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  10. Merge doc fixes

    renesass committed Dec 20, 2022
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  11. Doc fixes (#893)

    Co-authored-by: timruhkopf <timruhkopf@gmail.com>
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    Co-authored-by: dengdifan <difandeng@gmail.com>
    Co-authored-by: Alexander Tornede <tornede@tnt.uni-hannover.de>
    Co-authored-by: Sarah Krebs <s.krebs@ai.uni-hannover.de>
    6 people authored Dec 20, 2022
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  12. Make format

    renesass committed Dec 20, 2022
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  13. Satisfied mypy

    renesass committed Dec 20, 2022
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  14. Enabled more tests

    renesass committed Dec 20, 2022
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  15. Increased version

    renesass committed Dec 20, 2022
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Commits on Dec 21, 2022

  1. Mypy

    renesass committed Dec 21, 2022
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  2. Mypy

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  3. Mypy

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  5. Added SH+HB comparison

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  1. Stuff

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  2. Updated report

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  3. Fixed docstring

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  5. Removed vscode folder

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Commits on Dec 30, 2022

  1. Bugfixes

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  2. Doc fixes

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  3. Updated changelog

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  4. Make isort

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Commits on Jan 2, 2023

  1. Fix typos

    Sarah Krebs committed Jan 2, 2023
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Commits on Jan 7, 2023

  1. Removed new line

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  1. update description

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Commits on Jan 11, 2023

  1. Fix 531 correctly create integers in initial design

    This PR fixes a bug in which integer hyperparameters would not
    be created correctly in the initial design. This went
    unnoticed, except in the case where it was part of a condition
    and the function deactivate_inactive_hyperparameters was
    called.
    
    This PR fixes this bug by mapping the random float that was
    sampled by, for example and LHD or Sobol sequence, to the
    float representation of an integer by calling _transform and
    _inverse_transform of the integer hyperparameter.
    mfeurer committed Jan 11, 2023
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Commits on Jan 25, 2023

  1. Edit changelog

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Commits on Jan 27, 2023

  1. Merge pull request #899 from automl/description

    Updated description
    alexandertornede authored Jan 27, 2023
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  2. Add issue number

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  3. Merge pull request #900 from automl/fix_531

    Fix 531 correctly create integers in initial design
    sarah-segel authored Jan 27, 2023
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Commits on Jan 30, 2023

  1. Closes #907

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  3. Random forest speed up (#903)

    Co-authored-by: René Sass <mail@renesass.de>
    jeroenrook and renesass authored Jan 30, 2023
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  4. Add: workflow to update pre-commit versions (#874)

    Co-authored-by: René Sass <mail@renesass.de>
    eddiebergman and renesass authored Jan 30, 2023
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  2. [DOC] acquisition function maximizers

    timruhkopf committed Feb 2, 2023
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Commits on Feb 13, 2023

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  2. Merge pull request #919 from automl/hotfix/early_emails_stale_issues

    Hotfix/early emails stale issues
    helegraf authored Feb 13, 2023
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  4. Merge pull request #911 from automl/feature/specify_git-flow_workflows

    Add Git-Flow Workflow Specification
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Commits on Feb 23, 2023

  1. Update pre-commit: isort,flake8 version numbers

    Carolin Benjamins committed Feb 23, 2023
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  2. Merge branch 'development' of https://github.com/automl/SMAC3 into de…

    …velopment
    Carolin Benjamins committed Feb 23, 2023
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  3. Format black

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  4. Fix mypy

    Carolin Benjamins committed Feb 23, 2023
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Commits on Mar 2, 2023

  1. Ac bench (#929)

    * Add Branin AC Task
    
    * Add ac optimization type
    
    * Nicer plotting
    
    * Add ac mode
    
    * Update ac task
    
    * Make new smac env name adjustable
    
    * Increase python version for smac 1.4
    
    * Update benchmark
    
    * Update plotting
    
    * Goodby comments
    
    * Fix path
    
    * Fix 1.4 wrapper
    
    * Update benchmark results
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    benjamc and Carolin Benjamins authored Mar 2, 2023
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  2. [DOC] added documentation on the incumbent update

    timruhkopf committed Mar 2, 2023
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  3. Feature/add version to make publish (#931)

    * Add version, correct package name and use bash in makefile
    
    * Increase version
    
    * Increase version in makefile, add places with versions to make publish
    
    * Fix typo
    sarah-segel authored Mar 2, 2023
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  4. Transform integer feature names to strings (#930)

    * Transform int features to str
    
    * Fix pre-commit
    renesass authored Mar 2, 2023
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  6. Update version to 2.0.0

    benjamc authored Mar 2, 2023
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  7. Update version to 2.0.0

    Carolin Benjamins committed Mar 2, 2023
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  8. Update CHANGELOG.md

    benjamc authored Mar 2, 2023
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  9. Add information on deepcave to the readme

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Commits on Mar 3, 2023

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  2. Correct doc version

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Commits on Mar 23, 2023

  1. fix(runhistory): set id of the sampled config (#951)

    * fix: Set config_id of config in runhistory
    aron-bram authored Mar 23, 2023
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Commits on Apr 11, 2023

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  2. Resolve merge conflict

    Sarah Krebs committed Apr 11, 2023
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  3. feat: Option preventing SMAC setting up logging (#947)

    * Version 2.0.0 (#898)
    
    * Update runhistory2epm.py
    
    * pre_commit
    
    * Updated changelog
    
    * Fixed comment
    
    * Updated changelog
    
    * Some small improvements
    
    * Removed trailing space
    
    * Updated changelog
    
    * Restricted pynisher
    
    * Updated changelog
    
    * Link JMLR paper
    
    * Update bibtex entry
    
    Before: arxiv paper, now journal article.
    
    * Fixed citation in docs
    
    * Fixed callback typos
    
    * BOinG for mixed hyperparameter search space
    
    * fix format
    
    * maint
    
    * maint documentation
    
    * maint pre-commit
    
    * fix workflow
    
    * maint
    
    * Add dependabot for workflow files
    
    * Bump actions/setup-python from 2 to 4 (#849)
    
    Bumps [actions/setup-python](https://github.com/actions/setup-python) from 2 to 4.
    - [Release notes](https://github.com/actions/setup-python/releases)
    - [Commits](actions/setup-python@v2...v4)
    
    ---
    updated-dependencies:
    - dependency-name: actions/setup-python
      dependency-type: direct:production
      update-type: version-update:semver-major
    ...
    
    Signed-off-by: dependabot[bot] <support@github.com>
    
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    
    * Bump actions/checkout from 2 to 3 (#850)
    
    Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3.
    - [Release notes](https://github.com/actions/checkout/releases)
    - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
    - [Commits](actions/checkout@v2...v3)
    
    ---
    updated-dependencies:
    - dependency-name: actions/checkout
      dependency-type: direct:production
      update-type: version-update:semver-major
    ...
    
    Signed-off-by: dependabot[bot] <support@github.com>
    
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    
    * maint
    
    * Updated stale bot
    
    * Updated stale options again
    
    * Fixed typing
    
    * Increased version
    
    * rename check_point_in_ss to check_subspace_point
    
    * Make format
    
    * Uncomment test procedure
    
    * docstrings for boing facade
    
    * avoid typing namespace everywhere in epm_configuration_chooser
    
    * fix docstring in rh2epm_boing
    
    * Limit on dask
    
    * Trying to fix tests
    
    * Replaced typing in all files
    
    * docstring for boing subspace
    
    * Changed feature requests to feature
    
    * allow acq_optimizer_local_kwargs to be passed to boing subspace without acq_optimizer_local
    
    * fix pre-commit
    
    * Added any
    
    * Update facade
    
    * Fix typing
    * Match arguments from pSMAC with SMAC4AC signature
    * Add description of pSMAC to docstring
    * Add option to pass facade class to pSMAC
    
    * Add example for pSMAC
    
    * Removed docstring in readme's example
    
    * Corrected text
    
    * move construct_gp_kernels to smac.epm_gpytorch.boing_kernels
    
    * maint
    
    * fix wrongly imported func name in tests
    
    * Add reference for pSMAC #609
    
    * Rename example file
    
    * Added roadmap to readme
    
    * Prettification
    
    * Add result merger
    
    * Reformat with black
    
    * Delete unnecessary import
    
    * Fix typing
    
    * Inject first trajectory entry from file from first rundir
    
    * Add test for ResultMerger
    
    * Fix docstring
    
    * Get runhistory and trajectory from pSMAC run
    
    Via the result merger. Searchers rundirs and
    merges found runhistories and calculates a
    new trajectory.
    
    * Get trajectory
    
    * Add regex to requirements
    
    * Fixed MO cache problem
    
    * Fix MO tests
    
    * Fixing MO in AbstractRacer
    
    * Accepting ints
    
    * Hacking in the sum cost for MO
    
    * Fix mypi
    
    * Bugfix
    
    * Make mypi happy
    
    * Fix tests
    
    * Make format
    
    * Remove num_obj in MO optimizer
    
    * A lot of restructuring
    
    * Solve importings
    
    * Solve importings
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Updated changelog
    
    * Still fixing :)
    
    * fix docstrings
    
    * Change directory of tests
    
    * Fix ambiguous variable
    
    * Del newlines
    
    * fix mypy
    
    * mypy and doc fix
    
    * Removed int type checking
    
    * fix tests
    
    * Always return List of incs
    
    * fix path issue in example
    
    * maint boing facade
    
    * Better docstring
    
    * Return values if no bounds passed
    
    * Removed import
    
    * Return only one incumbent
    
    * Rename n_optimizers -> n_workers
    
    * Update example
    
    * Update docstring
    
    * Remove legacy function
    
    * Update to new signature
    
    * Update changelog.md
    
    * Format black
    
    * Update test
    
    * Please pre-commit
    
    * Merge development
    
    * Fix tests
    
    * Fix typos
    
    * Format black
    
    * Updated text
    
    * Increased version
    
    * Improved readme
    
    * SMAC logo 50%
    
    * SMAC logo 50%
    
    * Removed dev-2.0
    
    * Added doc workflow for latest tag
    
    * Fixing docs latest tag
    
    * Fixing docs latest tag
    
    * First steps new intensifier
    
    * Make it work again
    
    * MOVE random weight initialization to smbo ask method
    
    * ADD enable parego in unittests
    
    * Test issues
    
    * FIX formatting
    
    * Link to old documentation
    
    * MOVE random weight initialization to smbo ask method
    
    * ADD enable parego in unittests
    
    * FIX formatting
    
    * Fix unit tests
    
    * Add annotation
    
    * corrected log prob for tophat prior
    
    * Removed configurations from callback
    
    * Fixed tests
    
    * Fix mypy
    
    * Save docs as latest version too
    
    * Enabled all tests again
    
    * Make version an env
    
    * Added last version to docs
    
    * Global variable fix
    
    * Added v before version number
    
    * New Intensifier Implementation (#888)
    
    - Completely reimplemented the intensifiers (including Successive Halving and Hyperband): All intensifiers support multi-fidelity, multi-objective and multi-threading by nature now.
    - Expected behaviour for ask-and-tell interface ensured (also for Successive Halving).
    - Continuing a run is now fully supported.
    - Added more examples.
    - Updated documentation based on new implementation.
    
    * First benchmark steps
    
    * Added a warning
    
    * Set xi to 0.01
    
    * Incorporated walltime in trajectory
    
    * Working version of benchmark
    
    * Changed requirements
    
    * Changed xi back to 0.0 again
    
    * No duplicate budgets
    
    * Fixed bug which updated tracker wrongly
    
    * Bugfix: Delete correct bracket+stage
    
    * Fixed tests
    
    * Added costs to the trajectory
    
    * Changed initial design max ratio to 0.25
    
    * Make format
    
    * Added more details to intensifier
    
    * Finished benchmark
    
    * Added benchmark source files
    
    * Fixed tests because of initial design changes
    
    * Improved runhistory API
    
    * Fixed typo (#894)
    
    * Merge doc fixes
    
    * Doc fixes (#893)
    
    Co-authored-by: timruhkopf <timruhkopf@gmail.com>
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    Co-authored-by: dengdifan <difandeng@gmail.com>
    Co-authored-by: Alexander Tornede <tornede@tnt.uni-hannover.de>
    Co-authored-by: Sarah Krebs <s.krebs@ai.uni-hannover.de>
    
    * Make format
    
    * Satisfied mypy
    
    * Enabled more tests
    
    * Increased version
    
    * Mypy
    
    * Mypy
    
    * Mypy
    
    * Fixed critical bug when using highest budget for inc selection
    
    * Added SH+HB comparison
    
    * Stuff
    
    * Updated report
    
    * Fixed docstring
    
    * Fixed image path
    
    * Removed vscode folder
    
    * Bugfixes
    
    * Doc fixes
    
    * Updated changelog
    
    * Make isort
    
    * Fix typos
    
    * Removed new line
    
    * Added alpha2 to docs selection
    
    * update description
    
    * Fix 531 correctly create integers in initial design
    
    This PR fixes a bug in which integer hyperparameters would not
    be created correctly in the initial design. This went
    unnoticed, except in the case where it was part of a condition
    and the function deactivate_inactive_hyperparameters was
    called.
    
    This PR fixes this bug by mapping the random float that was
    sampled by, for example and LHD or Sobol sequence, to the
    float representation of an integer by calling _transform and
    _inverse_transform of the integer hyperparameter.
    
    * Add contact paragraph to README.
    
    * Increase days until stale issues are closed by stalebot (#904)
    
    * Edit changelog
    
    * Add issue number
    
    * Closes #907
    
    * Clarify origin of configurations (#908)
    
    * Random forest speed up (#903)
    
    Co-authored-by: René Sass <mail@renesass.de>
    
    * Add: workflow to update pre-commit versions (#874)
    
    Co-authored-by: René Sass <mail@renesass.de>
    
    * Add Git-Flow Workflow Specification
    
    * [DOC] acquisition function maximizers
    
    * Add stale reminder email action
    
    * Increase version number of ConfigSpace
    
    * Add guideline for updating copyright notice years to CONTRIBUTING.md
    
    * Update requirement for pyrfr (#920)
    
    * Update pre-commit: isort,flake8 version numbers
    
    * Format black
    
    * Fix mypy
    
    * Ac bench (#929)
    
    * Add Branin AC Task
    
    * Add ac optimization type
    
    * Nicer plotting
    
    * Add ac mode
    
    * Update ac task
    
    * Make new smac env name adjustable
    
    * Increase python version for smac 1.4
    
    * Update benchmark
    
    * Update plotting
    
    * Goodby comments
    
    * Fix path
    
    * Fix 1.4 wrapper
    
    * Update benchmark results
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    
    * [DOC] added documentation on the incumbent update
    
    * Feature/add version to make publish (#931)
    
    * Add version, correct package name and use bash in makefile
    
    * Increase version
    
    * Increase version in makefile, add places with versions to make publish
    
    * Fix typo
    
    * Transform integer feature names to strings (#930)
    
    * Transform int features to str
    
    * Fix pre-commit
    
    * Update version to 2.0.0
    
    * Update version to 2.0.0
    
    * Update CHANGELOG.md
    
    * Add information on deepcave to the readme
    
    * Correct doc version
    
    ---------
    
    Co-authored-by: dengdifan <33290713+dengdifan@users.noreply.github.com>
    Co-authored-by: dengdifan <difandeng@gmail.com>
    Co-authored-by: Matthias Feurer <feurerm@informatik.uni-freiburg.de>
    Co-authored-by: Carolin Benjamins <benjamin@tnt.uni-hannover.de>
    Co-authored-by: eddiebergman <eddiebergmanhs@gmail.com>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    Co-authored-by: C. Benjamins <75323339+benjamc@users.noreply.github.com>
    Co-authored-by: Katharina Eggensperger <eggenspk@informatik.uni-freiburg.de>
    Co-authored-by: Eric Kalosa-Kenyon <ekquasar@appdynamics.com>
    Co-authored-by: Pascal <66594767+PascalIversen@users.noreply.github.com>
    Co-authored-by: helegraf <Graf.Helena@web.de>
    Co-authored-by: timruhkopf <timruhkopf@gmail.com>
    Co-authored-by: Alexander Tornede <tornede@tnt.uni-hannover.de>
    Co-authored-by: Sarah Krebs <s.krebs@ai.uni-hannover.de>
    Co-authored-by: Alexander Tornede <a.tornede@ai.uni-hannover.de>
    Co-authored-by: Alexander Tornede <44395781+alexandertornede@users.noreply.github.com>
    Co-authored-by: Sarah Krebs <30651149+sarah-krebs@users.noreply.github.com>
    Co-authored-by: helegraf <h.graf@ai.uni-hannover.de>
    Co-authored-by: Jeroen Rook <jrook94@gmail.com>
    Co-authored-by: Tim Ruhkopf <timruhkopf@googlemail.com>
    
    * feat: Option preventing SMAC setting up logging
    
    * fix: Run isort
    
    * Bump peter-evans/create-pull-request from 3 to 5 (#958)
    
    Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 3 to 5.
    - [Release notes](https://github.com/peter-evans/create-pull-request/releases)
    - [Commits](peter-evans/create-pull-request@v3...v5)
    
    ---
    updated-dependencies:
    - dependency-name: peter-evans/create-pull-request
      dependency-type: direct:production
      update-type: version-update:semver-major
    ...
    
    Signed-off-by: dependabot[bot] <support@github.com>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    
    * Bump actions/setup-python from 2 to 4 (#945)
    
    Bumps [actions/setup-python](https://github.com/actions/setup-python) from 2 to 4.
    - [Release notes](https://github.com/actions/setup-python/releases)
    - [Commits](actions/setup-python@v2...v4)
    
    ---
    updated-dependencies:
    - dependency-name: actions/setup-python
      dependency-type: direct:production
      update-type: version-update:semver-major
    ...
    
    Signed-off-by: dependabot[bot] <support@github.com>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    
    * feat: Option preventing SMAC setting up logging
    
    * fix: Run isort
    
    * fix: Add to changelog
    
    * feat: Option preventing SMAC setting up logging
    
    * fix: Run isort
    
    ---------
    
    Signed-off-by: dependabot[bot] <support@github.com>
    Co-authored-by: René Sass <mail@renesass.de>
    Co-authored-by: dengdifan <33290713+dengdifan@users.noreply.github.com>
    Co-authored-by: dengdifan <difandeng@gmail.com>
    Co-authored-by: Matthias Feurer <feurerm@informatik.uni-freiburg.de>
    Co-authored-by: Carolin Benjamins <benjamin@tnt.uni-hannover.de>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    Co-authored-by: C. Benjamins <75323339+benjamc@users.noreply.github.com>
    Co-authored-by: Katharina Eggensperger <eggenspk@informatik.uni-freiburg.de>
    Co-authored-by: Eric Kalosa-Kenyon <ekquasar@appdynamics.com>
    Co-authored-by: Pascal <66594767+PascalIversen@users.noreply.github.com>
    Co-authored-by: helegraf <Graf.Helena@web.de>
    Co-authored-by: timruhkopf <timruhkopf@gmail.com>
    Co-authored-by: Alexander Tornede <tornede@tnt.uni-hannover.de>
    Co-authored-by: Sarah Krebs <s.krebs@ai.uni-hannover.de>
    Co-authored-by: Alexander Tornede <a.tornede@ai.uni-hannover.de>
    Co-authored-by: Alexander Tornede <44395781+alexandertornede@users.noreply.github.com>
    Co-authored-by: Sarah Krebs <30651149+sarah-krebs@users.noreply.github.com>
    Co-authored-by: helegraf <h.graf@ai.uni-hannover.de>
    Co-authored-by: Jeroen Rook <jrook94@gmail.com>
    Co-authored-by: Tim Ruhkopf <timruhkopf@googlemail.com>
    22 people authored Apr 11, 2023
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Commits on Apr 12, 2023

  1. Citation update (#961)

    * update CITATION.cff
    
    * update order in CITATION.cff
    
    * fix citation date
    
    * fix citation
    
    * maint
    dengdifan authored Apr 12, 2023
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Commits on Apr 15, 2023

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Commits on Apr 17, 2023

  1. Compute the actual differences between the isb keys. (#957)

    * Compute the actual differences between the isb keys.
    
    * Added change to CHANGELOG.md
    jeroenrook authored Apr 17, 2023
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  3. fix(logging): Prevent automatic logging setup at init (#970)

    * fix(logging): Prevent automatic logging setup at init
    
    * fix(logging): Rely on `setup_logging` to handle arg
    eddiebergman authored Apr 17, 2023
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  4. Merge pull request #974 from automl/hotfix/adjust_stale_reminder_sche…

    …dule
    
    Adjust schedule for stale reminder
    helegraf authored Apr 17, 2023
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  2. Merge pull request #981 from automl/fix/smbo_validate

    Fix validate method of SMAC to use the seed given in the scenario
    helegraf authored Apr 19, 2023
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Commits on Apr 25, 2023

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  2. Update CHANGELOG.md

    helegraf committed Apr 25, 2023
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  3. Merge pull request #989 from automl/fix/callback_order

    Fix callback order
    helegraf authored Apr 25, 2023
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  4. Merge pull request #980 from automl/fix/hyperband_bracket_scaling

    Adjust hyperband configuration distribution across brackets
    helegraf authored Apr 25, 2023
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  5. Merge pull request #991 from automl/hotfix/update_stale_labels

    Hotfix/update stale labels
    helegraf authored Apr 25, 2023
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Commits on May 4, 2023

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  3. [Feature] Initial Design now supports executing the default config pr…

    …ovided by the user by means of the configspace he generated. (and is no longer ignored)
    timruhkopf committed May 4, 2023
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  5. Pipe dask_client through facade for exec on hpc (#983)

    * Pipe dask_client through facade for exec on hpc
    
    * Handle pynisher's memory arg
    
    Before: Could only pass int via SMAC with the default unit B, but now tuple/list is possible
    
    * Update CHANGELOG.md
    
    * Make format
    
    * No printi
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    benjamc and Carolin Benjamins authored May 4, 2023
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  7. Merge remote-tracking branch 'origin/feature/initial_design_defaults'…

    … into feature/initial_design_defaults
    timruhkopf committed May 4, 2023
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  8. [doc-fix] the count of initial design configs is computed slightly di…

    …fferently
    timruhkopf committed May 4, 2023
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Commits on May 16, 2023

  1. Feature/metadata callback (#999)

    * Add example for using a callback to log run metadata to a file
    
    * Add issue number in changelog
    
    * Changelog formatting
    
    * Simplify metadata example
    
    * Simplify metadata example
    
    * Put callback in smac directory to allow importing it in custom repos
    
    * Move callback files to callback directory
    
    * Edit changelog
    
    * Correct metadata callback argument types
    
    * Additional metadata arguments in example
    
    * Set metadata default values in callback
    
    * Edit comment to fix PR
    sarah-segel authored May 16, 2023
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  3. Merge pull request #995 from automl/feature/initial_design_defaults

    [Feature] Initial Design now supports executing the default config pr…
    timruhkopf authored May 16, 2023
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  4. Documentation/dask client example (#1001)

    * Update requirements (dask_jobqueue)
    
    * Fix broken link
    
    * Ignore parallel example
    
    * Add parallelization example
    
    * Remove imports, add comment abt dask client
    
    * Add E's information
    
    * Update docs
    
    * Add comment about n_workers
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    benjamc and Carolin Benjamins authored May 16, 2023
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  5. Documentation/dask client example (#1001)

    * Update requirements (dask_jobqueue)
    
    * Fix broken link
    
    * Ignore parallel example
    
    * Add parallelization example
    
    * Remove imports, add comment abt dask client
    
    * Add E's information
    
    * Update docs
    
    * Add comment about n_workers
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    benjamc and Carolin Benjamins authored May 16, 2023
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  6. Feature/dask client (#1002)

    * Add info message that scenario.n_workers is ignored
    
    When passing a dask client,
    directly set n_workers in client.
    
    * Change info to warning
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    benjamc and Carolin Benjamins authored May 16, 2023
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  7. Update smac version (#1003)

    * Update smac version
    
    * Add hint on github release in make publish
    sarah-segel authored May 16, 2023
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  8. Update copyright year

    Carolin Benjamins committed May 16, 2023
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  9. check if config in rh when storing state (#997)

    * check if config in rh when storing state
    
    * maint
    
    * remove unnecessary changes
    
    * Adapt developer install instructions to include pre-commit installation (#994)
    
    * Pipe dask_client through facade for exec on hpc (#983)
    
    * Pipe dask_client through facade for exec on hpc
    
    * Handle pynisher's memory arg
    
    Before: Could only pass int via SMAC with the default unit B, but now tuple/list is possible
    
    * Update CHANGELOG.md
    
    * Make format
    
    * No printi
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    
    * update changelog
    
    * Increase tolerance for runhistory restoration test
    
    ---------
    
    Co-authored-by: Sarah Segel <30651149+sarah-segel@users.noreply.github.com>
    Co-authored-by: C. Benjamins <75323339+benjamc@users.noreply.github.com>
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    Co-authored-by: Helena Graf <h.graf@ai.uni-hannover.de>
    5 people authored May 16, 2023
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  11. Add a workaround to be able to pass a dataset via dask.scatter (#993)

    * [feat] Support dask.scatter
    
    * [fix] Add shared_data arg in abstract_facade
    
    * Address the comments by Eddie
    
    * [fix] Fix errors raised by Eddie
    
    * [format] Apply black locally
    
    * [fix] Get retries back to 16 as it was a mistake
    
    * [doc] Update CHANGELOG
    
    ---------
    
    Co-authored-by: helegraf <h.graf@ai.uni-hannover.de>
    Co-authored-by: C. Benjamins <75323339+benjamc@users.noreply.github.com>
    3 people authored May 16, 2023
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  12. Adding Binder links for example (#976)

    * binder
    
    * maint
    
    * fix dependencies
    
    * maint docs
    
    * Revert "maint docs"
    
    This reverts commit 4fa1a0f.
    
    * add requirement
    
    ---------
    
    Co-authored-by: Difan Deng <deng@dengster.tnt.uni-hannover.de>
    dengdifan and Difan Deng authored May 16, 2023
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Commits on May 17, 2023

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  2. Solve merge conflict

    Sarah Krebs committed May 17, 2023
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Commits on May 22, 2023

  1. Bugfix/fix broken link (#1012)

    * Remove commit message from dependabot PRs (#1010)
    
    * rename check_point_in_ss to check_subspace_point
    
    * Make format
    
    * Uncomment test procedure
    
    * docstrings for boing facade
    
    * avoid typing namespace everywhere in epm_configuration_chooser
    
    * fix docstring in rh2epm_boing
    
    * Limit on dask
    
    * Trying to fix tests
    
    * Replaced typing in all files
    
    * docstring for boing subspace
    
    * Changed feature requests to feature
    
    * allow acq_optimizer_local_kwargs to be passed to boing subspace without acq_optimizer_local
    
    * fix pre-commit
    
    * Added any
    
    * Update facade
    
    * Fix typing
    * Match arguments from pSMAC with SMAC4AC signature
    * Add description of pSMAC to docstring
    * Add option to pass facade class to pSMAC
    
    * Add example for pSMAC
    
    * Removed docstring in readme's example
    
    * Corrected text
    
    * move construct_gp_kernels to smac.epm_gpytorch.boing_kernels
    
    * maint
    
    * fix wrongly imported func name in tests
    
    * Add reference for pSMAC #609
    
    * Rename example file
    
    * Added roadmap to readme
    
    * Prettification
    
    * Add result merger
    
    * Reformat with black
    
    * Delete unnecessary import
    
    * Fix typing
    
    * Inject first trajectory entry from file from first rundir
    
    * Add test for ResultMerger
    
    * Fix docstring
    
    * Get runhistory and trajectory from pSMAC run
    
    Via the result merger. Searchers rundirs and
    merges found runhistories and calculates a
    new trajectory.
    
    * Get trajectory
    
    * Add regex to requirements
    
    * Fixed MO cache problem
    
    * Fix MO tests
    
    * Fixing MO in AbstractRacer
    
    * Accepting ints
    
    * Hacking in the sum cost for MO
    
    * Fix mypi
    
    * Bugfix
    
    * Make mypi happy
    
    * Fix tests
    
    * Make format
    
    * Remove num_obj in MO optimizer
    
    * A lot of restructuring
    
    * Solve importings
    
    * Solve importings
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Updated changelog
    
    * Still fixing :)
    
    * fix docstrings
    
    * Change directory of tests
    
    * Fix ambiguous variable
    
    * Del newlines
    
    * fix mypy
    
    * mypy and doc fix
    
    * Removed int type checking
    
    * fix tests
    
    * Always return List of incs
    
    * fix path issue in example
    
    * maint boing facade
    
    * Better docstring
    
    * Return values if no bounds passed
    
    * Removed import
    
    * Return only one incumbent
    
    * Rename n_optimizers -> n_workers
    
    * Update example
    
    * Update docstring
    
    * Remove legacy function
    
    * Update to new signature
    
    * Update changelog.md
    
    * Format black
    
    * Update test
    
    * Please pre-commit
    
    * Merge development
    
    * Fix tests
    
    * Fix typos
    
    * Format black
    
    * Updated text
    
    * Increased version
    
    * Improved readme
    
    * SMAC logo 50%
    
    * SMAC logo 50%
    
    * Removed dev-2.0
    
    * Added doc workflow for latest tag
    
    * Fixing docs latest tag
    
    * Fixing docs latest tag
    
    * First steps new intensifier
    
    * Make it work again
    
    * MOVE random weight initialization to smbo ask method
    
    * ADD enable parego in unittests
    
    * Test issues
    
    * FIX formatting
    
    * Link to old documentation
    
    * MOVE random weight initialization to smbo ask method
    
    * ADD enable parego in unittests
    
    * FIX formatting
    
    * Fix unit tests
    
    * Add annotation
    
    * corrected log prob for tophat prior
    
    * Removed configurations from callback
    
    * Fixed tests
    
    * Fix mypy
    
    * Save docs as latest version too
    
    * Enabled all tests again
    
    * Make version an env
    
    * Added last version to docs
    
    * Global variable fix
    
    * Added v before version number
    
    * New Intensifier Implementation (#888)
    
    - Completely reimplemented the intensifiers (including Successive Halving and Hyperband): All intensifiers support multi-fidelity, multi-objective and multi-threading by nature now.
    - Expected behaviour for ask-and-tell interface ensured (also for Successive Halving).
    - Continuing a run is now fully supported.
    - Added more examples.
    - Updated documentation based on new implementation.
    
    * First benchmark steps
    
    * Added a warning
    
    * Set xi to 0.01
    
    * Incorporated walltime in trajectory
    
    * Working version of benchmark
    
    * Changed requirements
    
    * Changed xi back to 0.0 again
    
    * No duplicate budgets
    
    * Fixed bug which updated tracker wrongly
    
    * Bugfix: Delete correct bracket+stage
    
    * Fixed tests
    
    * Added costs to the trajectory
    
    * Changed initial design max ratio to 0.25
    
    * Make format
    
    * Added more details to intensifier
    
    * Finished benchmark
    
    * Added benchmark source files
    
    * Fixed tests because of initial design changes
    
    * Improved runhistory API
    
    * Fixed typo (#894)
    
    * Merge doc fixes
    
    * Doc fixes (#893)
    
    Co-authored-by: timruhkopf <timruhkopf@gmail.com>
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    Co-authored-by: dengdifan <difandeng@gmail.com>
    Co-authored-by: Alexander Tornede <tornede@tnt.uni-hannover.de>
    Co-authored-by: Sarah Krebs <s.krebs@ai.uni-hannover.de>
    
    * Make format
    
    * Satisfied mypy
    
    * Enabled more tests
    
    * Increased version
    
    * Mypy
    
    * Mypy
    
    * Mypy
    
    * Fixed critical bug when using highest budget for inc selection
    
    * Added SH+HB comparison
    
    * Stuff
    
    * Updated report
    
    * Fixed docstring
    
    * Fixed image path
    
    * Removed vscode folder
    
    * Bugfixes
    
    * Doc fixes
    
    * Updated changelog
    
    * Make isort
    
    * Fix typos
    
    * Removed new line
    
    * Added alpha2 to docs selection
    
    * update description
    
    * Fix 531 correctly create integers in initial design
    
    This PR fixes a bug in which integer hyperparameters would not
    be created correctly in the initial design. This went
    unnoticed, except in the case where it was part of a condition
    and the function deactivate_inactive_hyperparameters was
    called.
    
    This PR fixes this bug by mapping the random float that was
    sampled by, for example and LHD or Sobol sequence, to the
    float representation of an integer by calling _transform and
    _inverse_transform of the integer hyperparameter.
    
    * Add contact paragraph to README.
    
    * Increase days until stale issues are closed by stalebot (#904)
    
    * Edit changelog
    
    * Add issue number
    
    * Closes #907
    
    * Clarify origin of configurations (#908)
    
    * Random forest speed up (#903)
    
    Co-authored-by: René Sass <mail@renesass.de>
    
    * Add: workflow to update pre-commit versions (#874)
    
    Co-authored-by: René Sass <mail@renesass.de>
    
    * Add Git-Flow Workflow Specification
    
    * [DOC] acquisition function maximizers
    
    * Add stale reminder email action
    
    * Increase version number of ConfigSpace
    
    * Add guideline for updating copyright notice years to CONTRIBUTING.md
    
    * Update requirement for pyrfr (#920)
    
    * Update pre-commit: isort,flake8 version numbers
    
    * Format black
    
    * Fix mypy
    
    * Ac bench (#929)
    
    * Add Branin AC Task
    
    * Add ac optimization type
    
    * Nicer plotting
    
    * Add ac mode
    
    * Update ac task
    
    * Make new smac env name adjustable
    
    * Increase python version for smac 1.4
    
    * Update benchmark
    
    * Update plotting
    
    * Goodby comments
    
    * Fix path
    
    * Fix 1.4 wrapper
    
    * Update benchmark results
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    
    * [DOC] added documentation on the incumbent update
    
    * Feature/add version to make publish (#931)
    
    * Add version, correct package name and use bash in makefile
    
    * Increase version
    
    * Increase version in makefile, add places with versions to make publish
    
    * Fix typo
    
    * Transform integer feature names to strings (#930)
    
    * Transform int features to str
    
    * Fix pre-commit
    
    * Update version to 2.0.0
    
    * Update version to 2.0.0
    
    * Update CHANGELOG.md
    
    * Add information on deepcave to the readme
    
    * Correct doc version
    
    * fix(runhistory): set id of the sampled config (#951)
    
    * fix: Set config_id of config in runhistory
    
    * ci: Set dependabot to target development branch (#963)
    
    * feat: Option preventing SMAC setting up logging (#947)
    
    * Version 2.0.0 (#898)
    
    * Update runhistory2epm.py
    
    * pre_commit
    
    * Updated changelog
    
    * Fixed comment
    
    * Updated changelog
    
    * Some small improvements
    
    * Removed trailing space
    
    * Updated changelog
    
    * Restricted pynisher
    
    * Updated changelog
    
    * Link JMLR paper
    
    * Update bibtex entry
    
    Before: arxiv paper, now journal article.
    
    * Fixed citation in docs
    
    * Fixed callback typos
    
    * BOinG for mixed hyperparameter search space
    
    * fix format
    
    * maint
    
    * maint documentation
    
    * maint pre-commit
    
    * fix workflow
    
    * maint
    
    * Add dependabot for workflow files
    
    * Bump actions/setup-python from 2 to 4 (#849)
    
    Bumps [actions/setup-python](https://github.com/actions/setup-python) from 2 to 4.
    - [Release notes](https://github.com/actions/setup-python/releases)
    - [Commits](actions/setup-python@v2...v4)
    
    ---
    updated-dependencies:
    - dependency-name: actions/setup-python
      dependency-type: direct:production
      update-type: version-update:semver-major
    ...
    
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    * Bump actions/checkout from 2 to 3 (#850)
    
    Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3.
    - [Release notes](https://github.com/actions/checkout/releases)
    - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
    - [Commits](actions/checkout@v2...v3)
    
    ---
    updated-dependencies:
    - dependency-name: actions/checkout
      dependency-type: direct:production
      update-type: version-update:semver-major
    ...
    
    Signed-off-by: dependabot[bot] <support@github.com>
    
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    
    * maint
    
    * Updated stale bot
    
    * Updated stale options again
    
    * Fixed typing
    
    * Increased version
    
    * rename check_point_in_ss to check_subspace_point
    
    * Make format
    
    * Uncomment test procedure
    
    * docstrings for boing facade
    
    * avoid typing namespace everywhere in epm_configuration_chooser
    
    * fix docstring in rh2epm_boing
    
    * Limit on dask
    
    * Trying to fix tests
    
    * Replaced typing in all files
    
    * docstring for boing subspace
    
    * Changed feature requests to feature
    
    * allow acq_optimizer_local_kwargs to be passed to boing subspace without acq_optimizer_local
    
    * fix pre-commit
    
    * Added any
    
    * Update facade
    
    * Fix typing
    * Match arguments from pSMAC with SMAC4AC signature
    * Add description of pSMAC to docstring
    * Add option to pass facade class to pSMAC
    
    * Add example for pSMAC
    
    * Removed docstring in readme's example
    
    * Corrected text
    
    * move construct_gp_kernels to smac.epm_gpytorch.boing_kernels
    
    * maint
    
    * fix wrongly imported func name in tests
    
    * Add reference for pSMAC #609
    
    * Rename example file
    
    * Added roadmap to readme
    
    * Prettification
    
    * Add result merger
    
    * Reformat with black
    
    * Delete unnecessary import
    
    * Fix typing
    
    * Inject first trajectory entry from file from first rundir
    
    * Add test for ResultMerger
    
    * Fix docstring
    
    * Get runhistory and trajectory from pSMAC run
    
    Via the result merger. Searchers rundirs and
    merges found runhistories and calculates a
    new trajectory.
    
    * Get trajectory
    
    * Add regex to requirements
    
    * Fixed MO cache problem
    
    * Fix MO tests
    
    * Fixing MO in AbstractRacer
    
    * Accepting ints
    
    * Hacking in the sum cost for MO
    
    * Fix mypi
    
    * Bugfix
    
    * Make mypi happy
    
    * Fix tests
    
    * Make format
    
    * Remove num_obj in MO optimizer
    
    * A lot of restructuring
    
    * Solve importings
    
    * Solve importings
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Fixing, fixing, fixing, ...
    
    * Updated changelog
    
    * Still fixing :)
    
    * fix docstrings
    
    * Change directory of tests
    
    * Fix ambiguous variable
    
    * Del newlines
    
    * fix mypy
    
    * mypy and doc fix
    
    * Removed int type checking
    
    * fix tests
    
    * Always return List of incs
    
    * fix path issue in example
    
    * maint boing facade
    
    * Better docstring
    
    * Return values if no bounds passed
    
    * Removed import
    
    * Return only one incumbent
    
    * Rename n_optimizers -> n_workers
    
    * Update example
    
    * Update docstring
    
    * Remove legacy function
    
    * Update to new signature
    
    * Update changelog.md
    
    * Format black
    
    * Update test
    
    * Please pre-commit
    
    * Merge development
    
    * Fix tests
    
    * Fix typos
    
    * Format black
    
    * Updated text
    
    * Increased version
    
    * Improved readme
    
    * SMAC logo 50%
    
    * SMAC logo 50%
    
    * Removed dev-2.0
    
    * Added doc workflow for latest tag
    
    * Fixing docs latest tag
    
    * Fixing docs latest tag
    
    * First steps new intensifier
    
    * Make it work again
    
    * MOVE random weight initialization to smbo ask method
    
    * ADD enable parego in unittests
    
    * Test issues
    
    * FIX formatting
    
    * Link to old documentation
    
    * MOVE random weight initialization to smbo ask method
    
    * ADD enable parego in unittests
    
    * FIX formatting
    
    * Fix unit tests
    
    * Add annotation
    
    * corrected log prob for tophat prior
    
    * Removed configurations from callback
    
    * Fixed tests
    
    * Fix mypy
    
    * Save docs as latest version too
    
    * Enabled all tests again
    
    * Make version an env
    
    * Added last version to docs
    
    * Global variable fix
    
    * Added v before version number
    
    * New Intensifier Implementation (#888)
    
    - Completely reimplemented the intensifiers (including Successive Halving and Hyperband): All intensifiers support multi-fidelity, multi-objective and multi-threading by nature now.
    - Expected behaviour for ask-and-tell interface ensured (also for Successive Halving).
    - Continuing a run is now fully supported.
    - Added more examples.
    - Updated documentation based on new implementation.
    
    * First benchmark steps
    
    * Added a warning
    
    * Set xi to 0.01
    
    * Incorporated walltime in trajectory
    
    * Working version of benchmark
    
    * Changed requirements
    
    * Changed xi back to 0.0 again
    
    * No duplicate budgets
    
    * Fixed bug which updated tracker wrongly
    
    * Bugfix: Delete correct bracket+stage
    
    * Fixed tests
    
    * Added costs to the trajectory
    
    * Changed initial design max ratio to 0.25
    
    * Make format
    
    * Added more details to intensifier
    
    * Finished benchmark
    
    * Added benchmark source files
    
    * Fixed tests because of initial design changes
    
    * Improved runhistory API
    
    * Fixed typo (#894)
    
    * Merge doc fixes
    
    * Doc fixes (#893)
    
    Co-authored-by: timruhkopf <timruhkopf@gmail.com>
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    Co-authored-by: dengdifan <difandeng@gmail.com>
    Co-authored-by: Alexander Tornede <tornede@tnt.uni-hannover.de>
    Co-authored-by: Sarah Krebs <s.krebs@ai.uni-hannover.de>
    
    * Make format
    
    * Satisfied mypy
    
    * Enabled more tests
    
    * Increased version
    
    * Mypy
    
    * Mypy
    
    * Mypy
    
    * Fixed critical bug when using highest budget for inc selection
    
    * Added SH+HB comparison
    
    * Stuff
    
    * Updated report
    
    * Fixed docstring
    
    * Fixed image path
    
    * Removed vscode folder
    
    * Bugfixes
    
    * Doc fixes
    
    * Updated changelog
    
    * Make isort
    
    * Fix typos
    
    * Removed new line
    
    * Added alpha2 to docs selection
    
    * update description
    
    * Fix 531 correctly create integers in initial design
    
    This PR fixes a bug in which integer hyperparameters would not
    be created correctly in the initial design. This went
    unnoticed, except in the case where it was part of a condition
    and the function deactivate_inactive_hyperparameters was
    called.
    
    This PR fixes this bug by mapping the random float that was
    sampled by, for example and LHD or Sobol sequence, to the
    float representation of an integer by calling _transform and
    _inverse_transform of the integer hyperparameter.
    
    * Add contact paragraph to README.
    
    * Increase days until stale issues are closed by stalebot (#904)
    
    * Edit changelog
    
    * Add issue number
    
    * Closes #907
    
    * Clarify origin of configurations (#908)
    
    * Random forest speed up (#903)
    
    Co-authored-by: René Sass <mail@renesass.de>
    
    * Add: workflow to update pre-commit versions (#874)
    
    Co-authored-by: René Sass <mail@renesass.de>
    
    * Add Git-Flow Workflow Specification
    
    * [DOC] acquisition function maximizers
    
    * Add stale reminder email action
    
    * Increase version number of ConfigSpace
    
    * Add guideline for updating copyright notice years to CONTRIBUTING.md
    
    * Update requirement for pyrfr (#920)
    
    * Update pre-commit: isort,flake8 version numbers
    
    * Format black
    
    * Fix mypy
    
    * Ac bench (#929)
    
    * Add Branin AC Task
    
    * Add ac optimization type
    
    * Nicer plotting
    
    * Add ac mode
    
    * Update ac task
    
    * Make new smac env name adjustable
    
    * Increase python version for smac 1.4
    
    * Update benchmark
    
    * Update plotting
    
    * Goodby comments
    
    * Fix path
    
    * Fix 1.4 wrapper
    
    * Update benchmark results
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    
    * [DOC] added documentation on the incumbent update
    
    * Feature/add version to make publish (#931)
    
    * Add version, correct package name and use bash in makefile
    
    * Increase version
    
    * Increase version in makefile, add places with versions to make publish
    
    * Fix typo
    
    * Transform integer feature names to strings (#930)
    
    * Transform int features to str
    
    * Fix pre-commit
    
    * Update version to 2.0.0
    
    * Update version to 2.0.0
    
    * Update CHANGELOG.md
    
    * Add information on deepcave to the readme
    
    * Correct doc version
    
    ---------
    
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    * feat: Option preventing SMAC setting up logging
    
    * fix: Run isort
    
    * Bump peter-evans/create-pull-request from 3 to 5 (#958)
    
    Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 3 to 5.
    - [Release notes](https://github.com/peter-evans/create-pull-request/releases)
    - [Commits](peter-evans/create-pull-request@v3...v5)
    
    ---
    updated-dependencies:
    - dependency-name: peter-evans/create-pull-request
      dependency-type: direct:production
      update-type: version-update:semver-major
    ...
    
    Signed-off-by: dependabot[bot] <support@github.com>
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    * Bump actions/setup-python from 2 to 4 (#945)
    
    Bumps [actions/setup-python](https://github.com/actions/setup-python) from 2 to 4.
    - [Release notes](https://github.com/actions/setup-python/releases)
    - [Commits](actions/setup-python@v2...v4)
    
    ---
    updated-dependencies:
    - dependency-name: actions/setup-python
      dependency-type: direct:production
      update-type: version-update:semver-major
    ...
    
    Signed-off-by: dependabot[bot] <support@github.com>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    
    * feat: Option preventing SMAC setting up logging
    
    * fix: Run isort
    
    * fix: Add to changelog
    
    * feat: Option preventing SMAC setting up logging
    
    * fix: Run isort
    
    ---------
    
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    * Citation update (#961)
    
    * update CITATION.cff
    
    * update order in CITATION.cff
    
    * fix citation date
    
    * fix citation
    
    * maint
    
    * Adjust hyperband configuration distribution across brackets
    
    * Compute the actual differences between the isb keys. (#957)
    
    * Compute the actual differences between the isb keys.
    
    * Added change to CHANGELOG.md
    
    * Adjust schedule for stale reminder
    
    * fix(logging): Prevent automatic logging setup at init (#970)
    
    * fix(logging): Prevent automatic logging setup at init
    
    * fix(logging): Rely on `setup_logging` to handle arg
    
    * Fix validate method of smbo, update docstring.
    
    * Allow callbacks to be added to a specific index, make callback registering public
    
    * Update CHANGELOG.md
    
    * Fix broken references (#988)
    
    * Adapt developer install instructions to include pre-commit installation (#994)
    
    * [Feature] Initial Design now supports executing the default config provided by the user by means of the configspace he generated. (and is no longer ignored)
    
    * Pipe dask_client through facade for exec on hpc (#983)
    
    * Pipe dask_client through facade for exec on hpc
    
    * Handle pynisher's memory arg
    
    Before: Could only pass int via SMAC with the default unit B, but now tuple/list is possible
    
    * Update CHANGELOG.md
    
    * Make format
    
    * No printi
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    
    * [Bug-fix] Pr was failing due to mutable additional configs default
    
    * [doc-fix] the count of initial design configs is computed slightly differently
    
    * Feature/metadata callback (#999)
    
    * Add example for using a callback to log run metadata to a file
    
    * Add issue number in changelog
    
    * Changelog formatting
    
    * Simplify metadata example
    
    * Simplify metadata example
    
    * Put callback in smac directory to allow importing it in custom repos
    
    * Move callback files to callback directory
    
    * Edit changelog
    
    * Correct metadata callback argument types
    
    * Additional metadata arguments in example
    
    * Set metadata default values in callback
    
    * Edit comment to fix PR
    
    * Documentation/dask client example (#1001)
    
    * Update requirements (dask_jobqueue)
    
    * Fix broken link
    
    * Ignore parallel example
    
    * Add parallelization example
    
    * Remove imports, add comment abt dask client
    
    * Add E's information
    
    * Update docs
    
    * Add comment about n_workers
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    
    * Documentation/dask client example (#1001)
    
    * Update requirements (dask_jobqueue)
    
    * Fix broken link
    
    * Ignore parallel example
    
    * Add parallelization example
    
    * Remove imports, add comment abt dask client
    
    * Add E's information
    
    * Update docs
    
    * Add comment about n_workers
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    
    * Feature/dask client (#1002)
    
    * Add info message that scenario.n_workers is ignored
    
    When passing a dask client,
    directly set n_workers in client.
    
    * Change info to warning
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    
    * Update smac version (#1003)
    
    * Update smac version
    
    * Add hint on github release in make publish
    
    * Update copyright year
    
    * check if config in rh when storing state (#997)
    
    * check if config in rh when storing state
    
    * maint
    
    * remove unnecessary changes
    
    * Adapt developer install instructions to include pre-commit installation (#994)
    
    * Pipe dask_client through facade for exec on hpc (#983)
    
    * Pipe dask_client through facade for exec on hpc
    
    * Handle pynisher's memory arg
    
    Before: Could only pass int via SMAC with the default unit B, but now tuple/list is possible
    
    * Update CHANGELOG.md
    
    * Make format
    
    * No printi
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    
    * update changelog
    
    * Increase tolerance for runhistory restoration test
    
    ---------
    
    Co-authored-by: Sarah Segel <30651149+sarah-segel@users.noreply.github.com>
    Co-authored-by: C. Benjamins <75323339+benjamc@users.noreply.github.com>
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    * Add a workaround to be able to pass a dataset via dask.scatter (#993)
    
    * [feat] Support dask.scatter
    
    * [fix] Add shared_data arg in abstract_facade
    
    * Address the comments by Eddie
    
    * [fix] Fix errors raised by Eddie
    
    * [format] Apply black locally
    
    * [fix] Get retries back to 16 as it was a mistake
    
    * [doc] Update CHANGELOG
    
    ---------
    
    Co-authored-by: helegraf <h.graf@ai.uni-hannover.de>
    Co-authored-by: C. Benjamins <75323339+benjamc@users.noreply.github.com>
    
    * Adding Binder links for example (#976)
    
    * binder
    
    * maint
    
    * fix dependencies
    
    * maint docs
    
    * Revert "maint docs"
    
    This reverts commit 4fa1a0f.
    
    * add requirement
    
    ---------
    
    Co-authored-by: Difan Deng <deng@dengster.tnt.uni-hannover.de>
    
    * Remove commit message from dependabot PRs (#1009)
    
    ---------
    
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    * Fix broken link
    
    ---------
    
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    Co-authored-by: Alexander Tornede <tornede@tnt.uni-hannover.de>
    Co-authored-by: Alexander Tornede <a.tornede@ai.uni-hannover.de>
    Co-authored-by: Alexander Tornede <44395781+alexandertornede@users.noreply.github.com>
    Co-authored-by: Sarah Krebs <30651149+sarah-krebs@users.noreply.github.com>
    Co-authored-by: helegraf <h.graf@ai.uni-hannover.de>
    Co-authored-by: Jeroen Rook <jrook94@gmail.com>
    Co-authored-by: Eddie Bergman <eddiebergmanhs@gmail.com>
    Co-authored-by: Tim Ruhkopf <timruhkopf@googlemail.com>
    Co-authored-by: Difan Deng <33290713+dengdifan@users.noreply.github.com>
    Co-authored-by: Aron Bahram <aron.bahram@gmail.com>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    Co-authored-by: Shuhei Watanabe <47781922+nabenabe0928@users.noreply.github.com>
    Co-authored-by: Difan Deng <deng@dengster.tnt.uni-hannover.de>
    25 people authored May 22, 2023
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Commits on May 23, 2023

  1. Drop torch requirements (#1015)

    * Remove torch requirements
    
    * Fix format
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    benjamc and Carolin Benjamins authored May 23, 2023
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Commits on Jun 1, 2023

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  2. Update CHANGELOG.md

    helegraf committed Jun 1, 2023
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  3. Merge pull request #1022 from automl/fix/sh_get_best_configs

    Fix SH get best configs in case of MO
    helegraf authored Jun 1, 2023
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  4. Feature/GitHub actions pr draft (#1008)

    Update the workflows only to trigger extensive tests for PRs that are not in the draft stage
    
    ---------
    
    Co-authored-by: timruhkopf <timruhkopf@gmail.com>
    Co-authored-by: Helena Graf <h.graf@ai.uni-hannover.de>
    3 people authored Jun 1, 2023
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Commits on Jun 2, 2023

  1. Update stale report to include issues with recent interactions (#1025)

    * Add recently updated issues to list of reminders.
    
    * Add recently updated issues to list of reminders.
    
    * Add recently updated issues to list of reminders.
    helegraf authored Jun 2, 2023
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Commits on Jun 6, 2023

  1. Raise error if resource limitation and parallelization is requested (#…

    …1023)
    
    * Add warnings for parallelism doc
    
    * Check for parallelization + pynisher
    
    Does not work together, throw error.
    Does not work bc Dask pickles jobs and
    pynisher runs the target function in a process.
    
    * Fix whitespaces
    
    ---------
    
    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    benjamc and Carolin Benjamins authored Jun 6, 2023
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  2. Raise an error for invalid scatter data (#1018)

    * [enhance] Add an error for scatter data
    
    * Update ChangeLog
    
    ---------
    
    Co-authored-by: C. Benjamins <75323339+benjamc@users.noreply.github.com>
    nabenabe0928 and benjamc authored Jun 6, 2023
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Commits on Jun 23, 2023

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Commits on Jun 26, 2023

  1. Fix callback order (#1040)

    Co-authored-by: Carolin Benjamins <benjamins@tnt.uni-hannover.de>
    benjamc and Carolin Benjamins authored Jun 26, 2023
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  2. fix: dtypes (#1044)

    eddiebergman authored Jun 26, 2023
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Commits on Jun 27, 2023

  1. Feature/improve documentation (#1028)

    * Experimental instruction for installing SMAC in windows via WSL
    
    * More detailed documentation regarding continuing runs
    
    * Fixes
    
    * Fixes
    
    * Fixes
    
    * Update docs/10_experimental.rst
    
    Co-authored-by: Difan Deng <33290713+dengdifan@users.noreply.github.com>
    
    * Fixes from PR
    
    * Fixes from PR
    
    * Fixes from PR
    
    * Fixes from PR
    
    * Fixes from PR
    
    ---------
    
    Co-authored-by: Difan Deng <33290713+dengdifan@users.noreply.github.com>
    sarah-segel and dengdifan authored Jun 27, 2023
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Commits on Jul 20, 2023

  1. Handle configspace as dictionary in mlp example (#1057)

    * Handle configspace as dictionary in mlp example
    
    * Adapt sgd loss to newest scikit-learn version
    
    * Add change to changelog
    
    * Handle configspace as dictionary in parego example
    
    * Correct get usage
    sarah-segel authored Jul 20, 2023
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Commits on Jul 31, 2023

  1. Raise version number

    Sarah Krebs committed Jul 31, 2023
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  2. Add missing period in docs.

    Sarah Krebs committed Jul 31, 2023
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