update windows exe build action

.github/workflows/build-windows-executable-app.yaml

@@ -4,17 +4,21 @@ on:
     branches: [ "main" ]
   pull_request:
     branches: [ "main" ]
+  workflow_dispatch:
 
 jobs:
   build-openms:
     runs-on: windows-latest
 
+    env:
+      OPENMS_VERSION: 3.0.0 
+
     steps:
     - name: Checkout
       uses: actions/checkout@v3
       with:
         repository: OpenMS/OpenMS
-        ref: develop  # take latest develop due to changes to SiriusAdapter
+        ref: release/${{ env.OPENMS_VERSION }}
         path: 'OpenMS'
 
     - name: Install Qt
@@ -61,11 +65,16 @@ jobs:
 
     - name: Load contrib build
       if: steps.cache-contrib-win.outputs.cache-hit != 'true'
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       run: |
-          cd OpenMS/contrib
-          curl -o contribbld.tar.gz https://abibuilder.cs.uni-tuebingen.de/archive/openms/contrib/windows/x64/msvc-14.2/contrib_build.tar.gz
-          tar -xzf contribbld.tar.gz
-          rm contribbld.tar.gz
+        cd OpenMS/contrib
+        # Download the file using the URL fetched from GitHub
+        gh release download -R OpenMS/contrib --pattern 'contrib_build-Windows.tar.gz'
+        # Extract the archive
+        7z x -so contrib_build-Windows.tar.gz | 7z x -si -ttar
+        rm contrib_build-Windows.tar.gz
+        ls
 
     - name: Setup ccache cache
       uses: actions/cache@v3
@@ -169,67 +178,44 @@ jobs:
         name: OpenMS-share
         path: share
 
-    - name: Set up Python
-      uses: actions/setup-python@v4
-      with:
-        python-version: ${{ env.PYTHON_VERSION }}
-
-    - name: Setup virtual environment
-      shell: cmd
+    - name: Setup python embeddable version
       run: |
-        python -m venv myenv
-
-        call myenv\Scripts\activate.bat   
-
-        pip install -r requirements.txt
+        mkdir python-${{ env.PYTHON_VERSION }}
+        curl -O https://www.python.org/ftp/python/${{ env.PYTHON_VERSION }}/python-${{ env.PYTHON_VERSION }}-embed-amd64.zip
+        unzip python-${{ env.PYTHON_VERSION }}-embed-amd64.zip -d python-${{ env.PYTHON_VERSION }}
+        rm python-${{ env.PYTHON_VERSION }}-embed-amd64.zip
 
-        pip install pyinstaller
-
-    - name: Write function to cli.py
-      shell: bash
+    - name: Install pip
       run: |
-        head -n -2 D:/a/streamlit-template/streamlit-template/myenv/Lib/site-packages/streamlit/web/cli.py > temp_cli.py
+        curl -O https://bootstrap.pypa.io/get-pip.py
+        ./python-${{ env.PYTHON_VERSION }}/python get-pip.py --no-warn-script-location
+        rm get-pip.py
 
-        cat << EOF >> temp_cli.py
-        def _main_run_clExplicit(file, command_line, args=[], flag_options=[]):
-            main._is_running_with_streamlit = True
-            bootstrap.run(file, command_line, args, flag_options)
-
-
-        if __name__ == "__main__":
-            main()
-        EOF
-
-        mv temp_cli.py D:/a/streamlit-template/streamlit-template/myenv/Lib/site-packages/streamlit/web/cli.py  
-
-    - name: Compile app with pyinstaller
-      shell: cmd
+    - name: Uncomment 'import site' in python311._pth file
       run: |
-        call myenv\Scripts\activate.bat 
-        pyinstaller --onefile --additional-hooks-dir ./hooks run_app.py --clean
+        sed -i 's/#import site/import site/' python-${{ env.PYTHON_VERSION }}/python311._pth
 
+    - name: Install Required Packages
+      run: .\python-${{ env.PYTHON_VERSION }}\python -m pip install --force-reinstall -r requirements.txt --no-warn-script-location
 
-    - name: Copy everything to dist directory
+    - name: Create run_app.bat file
       run: |
-        cp -r .streamlit dist/.streamlit
-        cp -r pages dist/pages
-        cp -r src dist/src
-        cp -r assets dist/assets
-        cp -r example-data dist/example-data
-        cp -r openms-bin dist/bin
-        cp -r share dist/share
-        cp Home.py dist/
-    
-    - name: Modify .spec file
-      shell: bash
+        echo '@echo off' > UmetaFlow.bat
+        echo '.\\python-${{ env.PYTHON_VERSION }}\\python -m streamlit run Home.py local' >> UmetaFlow.bat
+      
+    - name: Create All-in-one executable folder
       run: |
-        cp run_app_temp.spec run_app.spec
-
-    - name: Make executable
-      shell: cmd
-      run: |
-        call myenv\Scripts\activate.bat
-        pyinstaller run_app.spec --clean
+        mkdir streamlit_exe
+        mv python-${{ env.PYTHON_VERSION }} streamlit_exe
+        mv run_app.bat streamlit_exe
+        cp -r src streamlit_exe
+        cp -r pages streamlit_exe
+        cp -r assets streamlit_exe
+        cp -r example-data streamlit_exe
+        cp -r .streamlit streamlit_exe
+        cp -r openms-bin streamlit_exe/bin
+        cp -r share streamlit_exe/share
+        cp Home.py streamlit_exe
 
     - name: Delete OpenMS bin artifact
       uses: geekyeggo/delete-artifact@v2
@@ -240,9 +226,14 @@ jobs:
       uses: geekyeggo/delete-artifact@v2
       with:
           name: OpenMS-share
+
+    - name: Compress streamlit_exe folder to OpenMS-App.zip
+      run: |
+        7z a OpenMS-App.zip ./streamlit_exe/* -r
 
     - name: Upload artifact
       uses: actions/upload-artifact@v3
       with:
-        name: UmetaFlow-App
-        path: dist
+        name: OpenMS-App
+        path: OpenMS-App.zip
+