Merge pull request #2 from b-cubed-eu/working-url

Working url
b-cubed-eu · Nov 7, 2024 · 32f6326 · 32f6326
2 parents 2d79d0b + f91cae3
commit 32f6326
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -1,6 +1,7 @@
 ^.*\.Rproj$
 ^CITATION\.cff$
 ^LICENSE.md$
+^LICENSE\.md$
 ^README\.Rmd$
 ^\.Rproj\.user$
 ^\.github$
@@ -10,8 +11,10 @@
 ^_pkgdown\.yml$
 ^checklist.yml$
 ^codecov\.yml$
+^codemeta\.json$
 ^data-raw$
 ^docs$
 ^man-roxygen$
 ^organisation.yml$
 ^pkgdown$
+^vignettes/articles$
diff --git a/.zenodo.json b/.zenodo.json
@@ -1,6 +1,6 @@
 {
   "title": "dubicube: Calculation and Interpretation of Data Cube Indicator Uncertainty",
-  "version": "0.0.1",
+  "version": "0.0.2",
   "license": "MIT",
   "upload_type": "software",
   "description": "<p>An R package to explore calculation, interpretation and visualisation of uncertainty related to indicators based on biodiversity data cubes.<\/p>",

diff --git a/CITATION.cff b/CITATION.cff
@@ -26,4 +26,7 @@ repository-code: https://github.com/b-cubed-eu/dubicube/
 type: software
 abstract: "An R package to explore calculation, interpretation and visualisation of
   uncertainty related to indicators based on biodiversity data cubes."
-version: 0.0.1
+identifiers:
+- type: url
+  value: https://b-cubed-eu.github.io/dubicube/
+version: 0.0.2
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: dubicube
 Title: Calculation and Interpretation of Data Cube Indicator Uncertainty
-Version: 0.0.1
+Version: 0.0.2
 Authors@R: c(
     person("Ward", "Langeraert", , "ward.langeraert@inbo.be", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-5900-8109", affiliation = "Research Institute for Nature and Forest (INBO)")),
@@ -13,7 +13,8 @@ Description: An R package to explore calculation, interpretation and
     visualisation of uncertainty related to indicators based on
     biodiversity data cubes.
 License: MIT + file LICENSE
-URL: https://github.com/b-cubed-eu/dubicube
+URL: https://github.com/b-cubed-eu/dubicube,
+    https://b-cubed-eu.github.io/dubicube/
 BugReports: https://github.com/b-cubed-eu/dubicube/issues
 Suggests: 
     testthat (>= 3.0.0)

diff --git a/NEWS.md b/NEWS.md
@@ -1,6 +1,11 @@
+# dubicube 0.0.2
+
+* Add pkgdown website.
+* Add package description in `README.Rmd`.
+
 # dubicube 0.0.1
 
-* Set up basic package structure
+* Set up basic package structure.
 
 # dubicube 0.0.0
 

diff --git a/README.Rmd b/README.Rmd
@@ -16,7 +16,7 @@ knitr::opts_chunk$set(
 )
 ```
 
-# dubicube <a><img src="man/figures/logo.png" align="right" height="139" alt="dubicube website" /></a>
+# dubicube <a href="https://b-cubed-eu.github.io/dubicube/"><img src="man/figures/logo.png" align="right" height="139" alt="dubicube website" /></a>
 
 <!-- badges: start -->
 
@@ -27,7 +27,7 @@ knitr::opts_chunk$set(
 
 <!-- badges: end -->
 
-The goal of **dubicube** is to ...
+The **dubicube** package aims to deliver robustness measures for assessing the applicability of biodiversity data cubes, whether for general use or specific biodiversity indicators. These measures facilitate data exploration by providing insights into data quality and reliability. Additionally, the package includes functions for calculating indicator uncertainty using bootstrapping, as well as tools for interpreting and visualising uncertainty in biodiversity indicators derived from data cubes. 
 
 ## Installation
 

diff --git a/README.md b/README.md
@@ -1,7 +1,7 @@
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
-# dubicube <a><img src="man/figures/logo.png" align="right" height="139" alt="dubicube website" /></a>
+# dubicube <a href="https://b-cubed-eu.github.io/dubicube/"><img src="man/figures/logo.png" align="right" height="139" alt="dubicube website" /></a>
 
 <!-- badges: start -->
 
@@ -15,7 +15,14 @@ status](https://www.repostatus.org/badges/latest/concept.svg)](https://www.repos
 
 <!-- badges: end -->
 
-The goal of **dubicube** is to …
+The **dubicube** package aims to deliver robustness measures for
+assessing the applicability of biodiversity data cubes, whether for
+general use or specific biodiversity indicators. These measures
+facilitate data exploration by providing insights into data quality and
+reliability. Additionally, the package includes functions for
+calculating indicator uncertainty using bootstrapping, as well as tools
+for interpreting and visualising uncertainty in biodiversity indicators
+derived from data cubes.
 
 ## Installation
 

diff --git a/checklist.yml b/checklist.yml
@@ -14,11 +14,6 @@ allowed:
       Maintainer: 'Ward Langeraert <ward.langeraert@inbo.be>'
 
       New submission
-  - motivation: no problem
-    value: |-
-      checking top-level files ... NOTE
-      Non-standard file/directory found at top level:
-        'codemeta.json'
 required:
 - CITATION
 - DESCRIPTION

diff --git a/codemeta.json b/codemeta.json
@@ -8,7 +8,7 @@
   "codeRepository": "https://github.com/b-cubed-eu/dubicube",
   "issueTracker": "https://github.com/b-cubed-eu/dubicube/issues",
   "license": "https://spdx.org/licenses/MIT",
-  "version": "0.0.1",
+  "version": "0.0.2",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -71,7 +71,7 @@
   "softwareRequirements": {
     "SystemRequirements": null
   },
-  "fileSize": "96.489KB",
+  "fileSize": "96.96KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -88,7 +88,7 @@
           "familyName": "Van Daele"
         }
       },
-      "name": "dubicube: Calculation and Interpretation of Data Cube Indicator Uncertainty. Version 0.0.1",
+      "name": "dubicube: Calculation and Interpretation of Data Cube Indicator Uncertainty. Version 0.0.2",
       "url": "https://b-cubed-eu.github.io/dubicube/"
     }
   ],

diff --git a/inst/CITATION b/inst/CITATION
@@ -2,12 +2,12 @@ citHeader("To cite `dubicube` in publications please use:")
 # begin checklist entry
 bibentry(
   bibtype = "Manual",
-  title = "dubicube: Calculation and Interpretation of Data Cube Indicator Uncertainty. Version 0.0.1",
+  title = "dubicube: Calculation and Interpretation of Data Cube Indicator Uncertainty. Version 0.0.2",
   author = c( author = c(person(given = "Ward", family = "Langeraert"), person(given = "Toon", family = "Van Daele"))),
   year = 2024,
-  url = "https://github.com/b-cubed-eu/dubicube/",
+  url = "https://b-cubed-eu.github.io/dubicube/",
   abstract = "An R package to explore calculation, interpretation and visualisation of uncertainty related to indicators based on biodiversity data cubes.",
-  textVersion = "Langeraert, Ward; Van Daele, Toon (2024) dubicube: Calculation and Interpretation of Data Cube Indicator Uncertainty. Version 0.0.1. https://github.com/b-cubed-eu/dubicube/",
+  textVersion = "Langeraert, Ward; Van Daele, Toon (2024) dubicube: Calculation and Interpretation of Data Cube Indicator Uncertainty. Version 0.0.2. https://b-cubed-eu.github.io/dubicube/",
   keywords = "uncertainty quantification; uncertainty visualisation; biodiversity indicators; data cubes",
 )
 # end checklist entry