Improve documentation

README.md

@@ -7,7 +7,7 @@
 
 #  rfasstUI
 
-A web-based interactive scenario builder and visualization application for the rfasst air pollution model
+A web-based interactive scenario builder and visualization application for the [rfasst](https://github.com/bc3LC/rfasst)^1 air pollution model, an R version of the air quality reduced-form model [TM5-FASST](https://acp.copernicus.org/articles/18/16173/2018/)^2.
 
 ## Using `rfasstui`
 
@@ -50,9 +50,9 @@ collaborate!
 
 For more information about contributing, please contact Clàudia Rodés-Bachs at claudia.rodes@bc3research.org or Jon Sampedro at jon.sampedro@bc3research.org
 
-## Learn More About Rfasst
-Read more about the Rfasst air pollution model here:  [`rfasst` Documentation](https://bc3lc.github.io/rfasst/). `Rfasst` has been published in the following:
+## Learn More About rfasst
+Read more about the rfasst air pollution model here:  [`rfasst` Documentation](https://bc3lc.github.io/rfasst/), detailed in [Sampedro et al. 2022](https://doi.org/10.21105/joss.03820). It is an R version of the TM5-FASST model, detailed in [Van Dingenen et al. 2018](https://doi.org/10.5194/acp-18-16173-2018)
 
-```
-Sampedro et al., (2022). rfasst: An R tool to estimate air pollution impacts on health and agriculture. Journal of Open Source Software, 7(69), 3820, https://doi.org/10.21105/joss.03820
-```
+- Sampedro et al., (2022). "rfasst: An R tool to estimate air pollution impacts on health and agriculture." Journal of Open Source Software, 7(69), 3820, https://doi.org/10.21105/joss.03820
+
+- Van Dingenen, Rita, et al., (2018). "TM5-FASST: a global atmospheric source–receptor model for rapid impact analysis of emission changes on air quality and short-lived climate pollutants." Atmospheric Chemistry and Physics 18.21: 16173-16211.

docs/pkgdown.yml

@@ -3,7 +3,7 @@ pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
   tutorial: tutorial.html
-last_built: 2024-03-20T20:03Z
+last_built: 2024-03-25T08:00Z
 urls:
   reference: https://bc3lc.github.io/gcamreport/reference
   article: https://bc3lc.github.io/gcamreport/articles

inst/rfasstui/rsconnect/shinyapps.io/bc3lc/rfasstui.dcf

@@ -5,6 +5,6 @@ account: bc3lc
 server: shinyapps.io
 hostUrl: https://api.shinyapps.io/v1
 appId: 11517388
-bundleId: 8399473
+bundleId: 8399616
 url: https://bc3lc.shinyapps.io/rfasstui/
 version: 1

inst/rfasstui/ui.R

@@ -44,7 +44,9 @@ fluidPage(theme = shinythemes::shinytheme("readable"),
                                        agricultural damages, and economic losses attributable to air pollution using scenario outputs from the Global Change Analysis Model (GCAM).",
                                        style = "float:left"),
                                      p("This interactive version is built upon previous work including the development of the initial ",
-                                       a("rfasst R Package", href="https://github.com/bc3LC/rfasst/", target="blank"), "."),
+                                       a("rfasst R Package", href="https://github.com/bc3LC/rfasst/", target="blank"),
+                                       ", which replicates the calculations of the air quality reduced-form model ",
+                                       a("TM5-FASST", href="https://doi.org/10.5194/acp-18-16173-2018", target="blank")),
                                        style = "float: left"
               )),
               column(4, div(
@@ -293,22 +295,24 @@ fluidPage(theme = shinythemes::shinytheme("readable"),
                     h5("Documentation/Downloads"),
                     tags$hr(class="hrNav"),
                     p("The primary link to the rfasst model documentation is the ",
-                      a("online manual", href="https://jgcri.github.io/rfasst/index.html", target="blank"),
+                      a("online manual", href="https://bc3lc.github.io/rfasst/index.html", target="blank"),
                       ", which is included in the vignettes/manual directory. The code is also documented with ",
                       a("Doxygen-style", href="http://doxygen.org", target="blank"),
                       " comments."),
                     p("A formal model description paper via ",
-                      a("Sampedro et al. 2022", href="https://joss.theoj.org/papers/10.21105/joss.03820", target="blank")),
+                      a("Sampedro et al. 2022", href="https://joss.theoj.org/papers/10.21105/joss.03820", target="blank"),
+                      " and ",
+                      a("Van Dingenen et al. 2018.", href="https://doi.org/10.5194/acp-18-16173-2018", target="blank")),
                     tags$ul(
                       tags$li(
                         h5(tags$a("rfasst User Interface package download/source link ", href="https://github.com/bc3LC/rfasstui", target="blank"))),
                       tags$li(
                         h5(tags$a("rfasst R package download/source link", href="https://github.com/bc3LC/rfasst", target="blank"))),
                       tags$li(
                         h5(tags$a("Code and data for rfasst", href="https://zenodo.org/records/7417835", target="blank"),
-                           tags$img(src="https://zenodo.org/badge/DOI/10.5281/zenodo.344924589.svg", class="zenodo", alt="DOI")
-                        )
-                      )
+                           tags$img(src="https://zenodo.org/badge/DOI/10.5281/zenodo.344924589.svg", class="zenodo", alt="DOI"))),
+                      tags$li(
+                        h5(tags$a("Theorical description of TM5-FASST", href="https://doi.org/10.5194/acp-18-16173-2018", target="blank")))
                     ),
                     br(),
                     h5("Tools and software that work with rfasst"),