Fix arcs-tigmint rule in arcs-make (#165)

* Fix Tigmint call in arcs-make arcs-tigmint rule * Fix whitespace
bcgsc · Dec 6, 2023 · 265efd7 · 265efd7
1 parent 2e605f1
commit 265efd7
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diff --git a/...ut/test_scaffolds_c3_m8-10000_cut250_s70_r0.05_e30000_z500_l3_a0.9.tigpair_checkpoint.tsv b/...ut/test_scaffolds_c3_m8-10000_cut250_s70_r0.05_e30000_z500_l3_a0.9.tigpair_checkpoint.tsv
diff --git a/...ut/test_scaffolds_c3_m8-10000_cut250_s70_r0.05_e30000_z500_l3_a0.9.tigpair_checkpoint.tsv b/...ut/test_scaffolds_c3_m8-10000_cut250_s70_r0.05_e30000_z500_l3_a0.9.tigpair_checkpoint.tsv
@@ -0,0 +1,4 @@
+10	f1	r2	5	500
+10	f2	r1	5	500
+10	r2	r3	4	400
+10	f3	f2	4	400
diff --git a/bin/arcs-make b/bin/arcs-make
@@ -222,7 +222,7 @@ arks-tigmint: tigmint arks-with-tigmint
 tigmint: $(draft).tigmint.fa
 # Run tigmint
 $(draft).tigmint.fa: $(draft).fa $(reads).fq.gz
-	$(gtime) tigmint tigmint draft=$(draft) reads=$(reads) minsize=$(minsize) as=$(as) nm=$(nm) dist=$(dist) mapq=$(mapq) trim=$(trim) span=$(span) window=$(window) t=$t 
+	$(gtime) tigmint-make tigmint draft=$(draft) reads=$(reads) minsize=$(minsize) as=$(as) nm=$(nm) dist=$(dist) mapq=$(mapq) trim=$(trim) span=$(span) window=$(window) t=$t 
 
 #Pre-processing long reads; cut into shorter segments (pseudo-linked reads)
 $(reads).cut$(cut).fq.gz: $(long_reads)