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warrenlr committed Feb 23, 2023
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### Contents
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1. [Description](#description)
2. [Run modes - cheat sheet](#modes)
3. [Install](#install)
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14. [About ARCS/ARKS](#about)
15. [Citing ARCS/ARKS/LINKS](#cite)
16. [License](#license)
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### Description <a name=description></a>

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Thank you for your [![Stars](https://img.shields.io/github/stars/bcgsc/arcs.svg)](https://github.com/bcgsc/arcs/stargazers) and for using, developing and promoting this free software!


### Citing ARCS/ARKS/LINKS <a name=cite></a>

If you use ARCS/ARKS/LINKS in your research, please cite:

### Citing ARKS <a name=cite></a>
#### Citing ARKS

<pre>
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
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</pre>
[![link](https://img.shields.io/badge/ARKS-manuscript-brightgreen)](https://doi.org/10.1186/s12859-018-2243-x)

### Citing ARCS
#### Citing ARCS

<pre>
ARCS: scaffolding genome drafts with linked reads.
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**NOTE: The supplementary data and scripts have been moved to http://www.bcgsc.ca/downloads/supplementary/ARCS/**

### Citing LINKS
#### Citing LINKS

<pre>
LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.
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