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feat: Update GCNV environment to 0.9 kernel and GATK4.6.1 #557

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merged 2 commits into from
Dec 6, 2024

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@tedil tedil commented Dec 6, 2024

gcnvkernel 0.8 is not installable from conda-forge (only), since some dependencies are only available from anaconda.
We therefore update to gcnvkernel 0.9, which has updated its dependencies, and use the opportunity to update GATK to version 4.6 as well.

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coveralls commented Dec 6, 2024

Coverage Status

coverage: 85.77%. remained the same
when pulling f9897f3 on update-gcnvkernel-and-gatk
into 625187b on main.

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tedil commented Dec 6, 2024

Probably also fixes #340

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LGTM

@tedil tedil merged commit 7239fd0 into main Dec 6, 2024
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@tedil tedil deleted the update-gcnvkernel-and-gatk branch December 6, 2024 10:24
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4 participants