Fix vignette issues

billdenney · Jul 28, 2019 · 40332fc · 40332fc
1 parent 76dd180
commit 40332fc
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -1,8 +1,9 @@
 ^.*\.Rproj$
 ^\.Rproj\.user$
-example.*?.R
 ^\.travis\.yml$
 cran-comments.md
 ^\.github$
 ^LICENSE\.md$
-^CODE_OF_CONDUCT\.md$
+^CODE_OF_CONDUCT\.md$
+^doc$
+^Meta$
diff --git a/.gitignore b/.gitignore
@@ -2,3 +2,5 @@
 /R/*.Rhistory
 /tests/testthat/*.Rhistory
 /vignettes/*.Rhistory
+doc
+Meta
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: PKNCA
 Type: Package
 Title: Perform Pharmacokinetic Non-Compartmental Analysis
-Version: 0.9.0
+Version: 0.9.1
 Authors@R: c(
     person("Bill", "Denney", email="wdenney@humanpredictions.com", role=c("aut", "cre"), comment=c(ORCID="0000-0002-5759-428X")),
     person("Clare", "Buckeridge", email="clare.buckeridge@pfizer.com", role="aut"),

diff --git a/NEWS.md b/NEWS.md
@@ -4,6 +4,10 @@ will continue until then.  These will be especially noticable around
 the inclusion of IV NCA parameters and additional specifications of
 the dosing including dose amount and route.
 
+# PKNCA 0.9.1
+
+* Correct vignette building.
+
 # PKNCA 0.9.0
 
 * Breaking Change: `plot.PKNCAconc()` was moved to the pknca.reporting package

diff --git a/vignettes/AUC-Calculation-with-PKNCA.html → doc/AUC-Calculation-with-PKNCA.html b/vignettes/AUC-Calculation-with-PKNCA.html → doc/AUC-Calculation-with-PKNCA.html
diff --git a/doc/Data-Cleaning-in-PKNCA.html b/doc/Data-Cleaning-in-PKNCA.html
diff --git a/vignettes/Example-theophylline.html → doc/Example-theophylline.html b/vignettes/Example-theophylline.html → doc/Example-theophylline.html
@@ -4062,7 +4062,7 @@ <h1>Multiple Dose Example</h1>
 ## attr(,&quot;class&quot;)
 ## [1] &quot;PKNCAresults&quot; &quot;list&quot;        
 ## attr(,&quot;provenance&quot;)
-## Provenance hash 51b59f882a9f3a2811324a5ff10bb22b generated on 2019-07-21 10:07:39 with R version 3.6.1 (2019-07-05).</code></pre>
+## Provenance hash 51b59f882a9f3a2811324a5ff10bb22b generated on 2019-07-28 14:49:08 with R version 3.6.1 (2019-07-05).</code></pre>
 <div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb21-1"><a href="#cb21-1"></a><span class="kw">summary</span>(results_obj)</span></code></pre></div>
 <pre><code>##  start end  N     auclast        cmax
 ##      0  24 12 98.8 [23.0] 8.65 [17.0]

diff --git a/vignettes/Introduction-and-Usage.html → doc/Introduction-and-Usage.html b/vignettes/Introduction-and-Usage.html → doc/Introduction-and-Usage.html
diff --git a/...ware-Interpolation-and-Extrapolation.html → ...ware-Interpolation-and-Extrapolation.html b/...ware-Interpolation-and-Extrapolation.html → ...ware-Interpolation-and-Extrapolation.html
diff --git a/vignettes/Options-for-Controlling-PKNCA.html → doc/Options-for-Controlling-PKNCA.html b/vignettes/Options-for-Controlling-PKNCA.html → doc/Options-for-Controlling-PKNCA.html
@@ -242,7 +242,7 @@ <h4 class="author">Bill Denney</h4>
 
 <div id="summary" class="section level1">
 <h1>Summary</h1>
-<p>PKNCA has many options that control its function. These options have effects throughout the package. The options are controlled using either the <code>PKNCA.options</code> function or by passing the <code>options</code> argument to any of the functions with that as an argument. All options supported by the current version of PKNCA (0.8.5.9013) are listed below with their descriptions.</p>
+<p>PKNCA has many options that control its function. These options have effects throughout the package. The options are controlled using either the <code>PKNCA.options</code> function or by passing the <code>options</code> argument to any of the functions with that as an argument. All options supported by the current version of PKNCA (0.9.0) are listed below with their descriptions.</p>
 </div>
 <div id="options" class="section level1">
 <h1>Options</h1>