Merge remote-tracking branch 'origin/cluster_1306'

bio-datascience · Jun 21, 2024 · a2a5e29 · a2a5e29
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diff --git a/analysis/B_subt_Rosenthal/Bsub_damage_summary_figures.ipynb b/analysis/B_subt_Rosenthal/Bsub_damage_summary_figures.ipynb
diff --git a/analysis/B_subt_Rosenthal/Bsub_minmed_summary_figures.ipynb b/analysis/B_subt_Rosenthal/Bsub_minmed_summary_figures.ipynb
diff --git a/analysis/B_subt_Rosenthal/MPA_summary_figures.ipynb b/analysis/B_subt_Rosenthal/MPA_summary_figures.ipynb
diff --git a/analysis/BacDrop_data/Ecoli_Summary_figures.ipynb b/analysis/BacDrop_data/Ecoli_Summary_figures.ipynb
diff --git a/analysis/BacDrop_data/Enterococcus_Summary_figures.ipynb b/analysis/BacDrop_data/Enterococcus_Summary_figures.ipynb
diff --git a/analysis/BacDrop_data/Klebsiella_4species_Summary_figures.ipynb b/analysis/BacDrop_data/Klebsiella_4species_Summary_figures.ipynb
diff --git a/analysis/BacDrop_data/Klebsiella_BIDMC35_Summary_figures.ipynb b/analysis/BacDrop_data/Klebsiella_BIDMC35_Summary_figures.ipynb
diff --git a/analysis/BacDrop_data/Klebsiella_antibiotics_Summary_figures.ipynb b/analysis/BacDrop_data/Klebsiella_antibiotics_Summary_figures.ipynb
diff --git a/analysis/BacDrop_data/Klebsiella_untreated_Summary_figures.ipynb b/analysis/BacDrop_data/Klebsiella_untreated_Summary_figures.ipynb
diff --git a/analysis/BacDrop_data/Pseudomonas_BacDrop_Summary_figures.ipynb b/analysis/BacDrop_data/Pseudomonas_BacDrop_Summary_figures.ipynb
diff --git a/analysis/E_coli_S1/S1_Summary_figures.ipynb b/analysis/E_coli_S1/S1_Summary_figures.ipynb
diff --git a/analysis/P_aero_S2S3/S2S3_Summary_figures.ipynb b/analysis/P_aero_S2S3/S2S3_Summary_figures.ipynb
diff --git a/analysis/P_aero_S2S3/S2S3_cluster23_cluster_analysis.ipynb b/analysis/P_aero_S2S3/S2S3_cluster23_cluster_analysis.ipynb
diff --git a/analysis/P_aero_S2S3/S2_Summary_figures.ipynb b/analysis/P_aero_S2S3/S2_Summary_figures.ipynb
diff --git a/analysis/P_aero_S2S3/S3_Summary_figures.ipynb b/analysis/P_aero_S2S3/S3_Summary_figures.ipynb
diff --git a/analysis/data_summary_figures/data_exploration_v2.pdf b/analysis/data_summary_figures/data_exploration_v2.pdf
diff --git a/analysis/dataset_summaries.ipynb b/analysis/dataset_summaries.ipynb