Bio2BEL ChEBI

Convert the ChEBI ontology and related chemical information to BEL.

Installation

bio2bel_chebi can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install bio2bel_chebi

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/chebi.git@master

Setup

ChEBI can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_chebi
>>> chebi_manager = bio2bel_chebi.Manager()
>>> chebi_manager.populate()

Command Line Utility

bio2bel_chebi populate