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Linages Pointer error #52
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Thanks @sophiejwalton I have no idea how to track this down, but it is helpful that you are actually getting more detailed issues about the crash. Can you tell me a little more about how you are running the code? [From the terminal I assume? anything else?] |
WilliamIX
added
bug
Something isn't working
Lineages
Issues pertaining to bioscrape lineages
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Sep 17, 2020
I think this was fixed in a recent patch. Can we confirm/deny? Does anyone have code that reliably generates the error? |
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Hello,
I have been running lineages through bash (not Jupyter notebook) and I obtain the following error:
python3(4011,0x104d505c0) malloc: *** error for object 0x40c7cd8000000000: pointer being freed was not allocated
python3(4011,0x104d505c0) malloc: *** set a breakpoint in malloc_error_break to debug
Abort trap: 6
This is after running py_PropagateInteractingCells with on order of 100s of cells in a run. My script asks for 100 simulations, but it halts after 1. I am using macOS Mojave version 10.14.5. I have 16 GB of ram on a 2.3 GHz Intel Core i5.
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