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Issues list

Lineage installation does not build with PyPa Bioscrape Core Issues pertaining to core bioscrape functionality bug Something isn't working Lineages Issues pertaining to bioscrape lineages
#174 opened Jul 12, 2024 by ayush9pandey
Propogate Lineages occasionally duplicating returned cells into multiple bins Lineages Issues pertaining to bioscrape lineages
#171 opened Jun 8, 2023 by WilliamIX
SBML File Import error
#164 opened Feb 9, 2023 by SpencerUyematsu
A Pandas dataframe for sensitivity analysis matrix instead of 3D array Analysis Features Helper functions for analyzing circuits (e.g. Sensitivity analysis) enhancement New feature or request
#130 opened Jul 6, 2022 by ayush9pandey
Timing the bioscrape simulations enhancement New feature or request help wanted Extra attention is needed
#127 opened Jun 24, 2022 by ayush9pandey
Possible Timepoint issues in Lineage Simulations Lineages Issues pertaining to bioscrape lineages
#119 opened Sep 16, 2021 by WilliamIX
Species counts are stored as doubles, not ints, allowing some nasty bugs. Bioscrape Core Issues pertaining to core bioscrape functionality documentation Software and example documentation invalid This doesn't seem right Lineages Issues pertaining to bioscrape lineages
#116 opened Aug 13, 2021 by sclamons
Add Noise Model to Bioscrape Inference enhancement New feature or request Inference Issues Pertaining to Bioscrape Inference, Parameter Identificaiton, and System Identification
Add SBML Events as Bioscrape Rules Bioscrape Core Issues pertaining to core bioscrape functionality enhancement New feature or request
#53 opened Jul 8, 2020 by WilliamIX
Linages Pointer error bug Something isn't working Lineages Issues pertaining to bioscrape lineages
#52 opened Jun 29, 2020 by sophiejwalton
Sometimes SingleCellSSAResults have duplicate timepoints bug Something isn't working Lineages Issues pertaining to bioscrape lineages
#48 opened Jun 11, 2020 by WilliamIX
py_SimulateInteractingLineages throws and error when initial_cell_states = [] bug Something isn't working Lineages Issues pertaining to bioscrape lineages
#47 opened Jun 11, 2020 by WilliamIX
py_initialize_model should be called automatically from the py_simulate wrappers bug Something isn't working Lineages Issues pertaining to bioscrape lineages
#46 opened Jun 11, 2020 by WilliamIX
Use cpdef instead of a wrapper "py_<function>" function where appropriate documentation Software and example documentation enhancement New feature or request
#45 opened Jun 8, 2020 by sclamons
Speeding up Bioscrape Inference enhancement New feature or request help wanted Extra attention is needed Inference Issues Pertaining to Bioscrape Inference, Parameter Identificaiton, and System Identification
#38 opened May 28, 2020 by WilliamIX
Please Document Seg Faults with interacting Lineage Simulations bug Something isn't working help wanted Extra attention is needed question Further information is requested
#36 opened May 28, 2020 by WilliamIX
Cell Counts as Lineage Parameters documentation Software and example documentation enhancement New feature or request Lineages Issues pertaining to bioscrape lineages
#35 opened May 28, 2020 by WilliamIX
Using multiprocessing->map on Lineage simulations produces duplicate simulations bug Something isn't working Lineages Issues pertaining to bioscrape lineages
#32 opened May 22, 2020 by sclamons
Add support for diffusion reactions and multiple volumes Bioscrape Core Issues pertaining to core bioscrape functionality enhancement New feature or request help wanted Extra attention is needed
#30 opened Apr 30, 2020 by WilliamIX
Add Multiprocessing example Bioscrape Core Issues pertaining to core bioscrape functionality
#28 opened Apr 28, 2020 by WilliamIX
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