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@biocorecrg

Biocore@CRG

The Bioinformatics Unit provides researchers at CRG-CNAG/PRBB and external organizations with bioinformatics services and training
README.md

CRG's Biocore GitHub

Welcome to the CRG Bioinformatics Core GitHub! We provide researchers with services of analyses of high-throughput sequencing (NGS, Nanopore, droplet-based) and other biomedical data, software/pipelines and database development, and bioinformatics training. We focus on delivering reproducible results using modern computational solutions (Nextflow, Cloud, Linux containers).

Website: https://biocore.crg.eu/

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  1. master_of_pores master_of_pores Public

    Nextflow pipeline for analysis of direct RNA Nanopore reads

    Nextflow 95 16

  2. ExOrthist ExOrthist Public

    ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.

    Nextflow 21 4

  3. BioNextflow BioNextflow Public

    A collection of modules and sub-workflows for Nextflow

    Nextflow 26 4

  4. allele_specific_RNAseq allele_specific_RNAseq Public

    Allele Specific RNAseq

    Nextflow 10 2

  5. PhD_course_genomics_format_2024 PhD_course_genomics_format_2024 Public

    Forked from biocorecrg/PhD_course_genomics_format_2023

    PhD course about genomics format 2024

  6. PhD_course_containers_2024 PhD_course_containers_2024 Public

    Forked from biocorecrg/PhD_course_containers_2023

    Scientific Containers CRG PhD Course 2024

    Python

Repositories

Showing 10 of 90 repositories
  • docker-amazonlinux-perlbrew Public Forked from CRG-CNAG/docker-centos-perlbrew

    Basic Docker image for running AmazonLinux with perlbrew installed

    biocorecrg/docker-amazonlinux-perlbrew’s past year of commit activity
    Dockerfile 0 3 0 0 Updated Dec 19, 2024
  • docker-debian-perlbrew Public

    Basic Docker image for running Debian with perlbrew installed

    biocorecrg/docker-debian-perlbrew’s past year of commit activity
    Dockerfile 3 0 0 0 Updated Dec 19, 2024
  • docker-almalinux-perlbrew Public

    Images for running Perlbrew scripts using Almalinux.

    biocorecrg/docker-almalinux-perlbrew’s past year of commit activity
    0 0 0 0 Updated Dec 19, 2024
  • allele_specific_RNAseq Public

    Allele Specific RNAseq

    biocorecrg/allele_specific_RNAseq’s past year of commit activity
    Nextflow 10 2 1 1 Updated Dec 16, 2024
  • master_of_pores Public

    Nextflow pipeline for analysis of direct RNA Nanopore reads

    biocorecrg/master_of_pores’s past year of commit activity
    Nextflow 95 MIT 16 4 0 Updated Dec 9, 2024
  • BioNextflow Public

    A collection of modules and sub-workflows for Nextflow

    biocorecrg/BioNextflow’s past year of commit activity
    Nextflow 26 GPL-3.0 4 6 0 Updated Dec 9, 2024
  • ExOrthist Public

    ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.

    biocorecrg/ExOrthist’s past year of commit activity
    Nextflow 21 MIT 4 4 0 Updated Dec 5, 2024
  • MoP3 Public

    Master of Pores SSJ3

    biocorecrg/MoP3’s past year of commit activity
    R 0 MIT 0 15 (1 issue needs help) 0 Updated Dec 4, 2024
  • MOP2 Public

    Master of Pores 2

    biocorecrg/MOP2’s past year of commit activity
    Nextflow 23 MIT 7 21 (1 issue needs help) 0 Updated Dec 4, 2024
  • NGS-QC-Course Public
    biocorecrg/NGS-QC-Course’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 19, 2024
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