MyLake
This is the Mylake GitHub page. See the wiki here for more info, as well as https://github.com/aemon-j/aquatic-ecosystem-model-library/wiki/MyLake for model description within the Aemon-J model library. See
MyLake is a 1D process-based lake model written in Matlab. It is developped as an open-source project, currently at the Norwegien Institute for Water Research-NIVA, the University of Helsinki (Finland), and Universite Laval (Canada).
All versions are available upon request (see below), however only published version are publicly available.
MyLake is also part of the ongoing Lake EnsemblR effort for 1D hydrodynamic modelling in R : https://github.com/aemon-j/LakeEnsemblR
MyLake
- Version: 1.1.2
- Year: 2007
- Publication: Saloranta, T. M.; Andersen, T., MyLake - A multi-year lake simulation model code suitable for uncertainty and sensitivity analysis simulations. Ecol. Model. 2007, 207 (1), 45-60. https://doi.org/10.1016/j.ecolmodel.2007.03.018
- Contact: tus@nve.no
- Code: "master" branch in this repository.
- Comment: This is the original version of MyLake. MyLake v1.2 simulates lake hydrodynamics, ice and snow thickness, photon budget, phosphorus speciation, algual dynamics (2 pools) and sediment-water interactions (box model).
- Manual: https://niva.brage.unit.no/niva-xmlui/handle/11250/212445 , see also https://www.dkit.ie/system/files/files_with_detail/netlake_toolbox_06_mylake.pdf
- Contact: tse@nve.no
MyLake + DOC degradation and fixed light attenuation by DOC
- Version: FOKEMA
- Year: 2014
- Publication: Holmberg, M.; Futter, M. N.; Kotamäki, N.; Fronzek, S.; Forsius, M.; Kiuru, P.; Pirttioja, N.; Rasmus, K.; Starr, M.; Vuorenmaa, J., Effects of changing climate on the hydrology of a boreal catchment and lake DOC - probabilistic assessment of a dynamic model chain. Boreal Env. Res. 2014, 19 (suppl. A), 66-82. https://helda.helsinki.fi/handle/10138/165169
- Code: See "fokema" branch in this repository.
- Contact : maria.holmberg@ymparisto.fi
MyLake + DOC degradation (3 pools), DIC equilibria, DO dynamics, microbial respiration
- Version: MyLake-O
- Year: 2015
- Publication: Couture RM, DeWit H, Tominaga K, Kiuru P, Markelov I (2015) Oxygen dynamics in a boreal lake responds to long-term changes in climate, ice phenology and DOC inputs. Journal of Geophysical Research: Biogeosciences 120 (11) 2441-2456. https://doi.org/10.1002/2015JG003065
- Contact : raoul.couture@chm.ulaval.ca
MyLake + CO2 & CH4, different gas exchange models
- Version: MyLake-C
- Year: 2018-2019
- Publications:
- Petri Kiuru, Anne Ojala, Ivan Mammarella, Jouni Heiskanen, Kukka-Maaria Erkkilä, Heli Miettinen, Timo Vesala, and Timo Huttula1 (2019) Applicability and consequences of the integration of alternative models for CO2 transfer velocity into a process-based lake model. Biogeosciences (16) 3297–3317. https://doi.org/10.5194/bg-16-3297-2019
- Petri Kiuru,Anne Ojala,Ivan Mammarella,Jouni Heiskanen,Matti Kämäräinen,Timo Vesala,Timo Huttula (2018) Effects of Climate Change on CO2 Concentration and Efflux in a Humic Boreal Lake: A Modeling Study. JGR Biogeosciences https://doi.org/10.1029/2018JG004585
- Code: https://github.com/biogeochemistry/MyLake_C
- Contact: petri.kiuru81@gmail.com
- Manual: https://github.com/biogeochemistry/MyLake_C/blob/MyLake_C-gtsv/MyLake_C_manual_june_2019.pdf
MyLake + Sediment-water interactions & selected C, N, P ,S, Fe, Al, & Si reactions in water-column
- Version: MyLake-Sediment
- Year: 2019
- Publication: Markelov I, Couture R-M, Fischer R, Haande S, Van Cappellen P. Coupling Water Column and Sediment Biogeochemical Dynamics: Modeling Internal Phosphorus Loading, Climate Change Responses and Mitigation Measures in Lake Vansjø, Norway (2019) Journal of Geophysical Research: Biogeosciences. https://doi.org/10.1029/2019JG005254
- Code: https://github.com/biogeochemistry/Sediment-v2.0 and https://github.com/biogeochemistry/MyLake-v2.0
- Contact: raoul.couture@chm.ulaval.ca
MyLake + Dynamic Kd for PAR and UV attenuation
- Version: MyLake-O + dynamic Kd
- Year: 2021
- Publication: Attenuation of photosynthetically active radiation and ultraviolet light in response to changing dissolved organic carbon in browning lakes: Modelling and parametrization (2021) Pilla RM and Couture RM. Limnology and Oceanography https://doi.org/10.1002/lno.11753
- Code: https://github.com/biogeochemistry/MyLake-Giles
- Contact: pillarm@miamioh.edu
MyLake-Sediment + nitrogen uptake by phytoplankton
- Version: MyLake-Sediment + N
- Year: 2021
- Publication: Warming combined with experimental eutrophication intensifies lake phytoplankton blooms (2021) Salk KR, Venkiteswaran JJ, Couture RM, Higgins SN, Paterson MJ, Schiff SL. Limnology and Oceanography https://doi.org/10.1002/lno.11982
- Code: https://github.com/biogeochemistry/MyLake_Lake-227
- Contact: kateri.salk@duke.edu
MyLake-2D
- Version: MyLake-Solar
- Year: 2022
- Publication: Floating solar panels on reservoirs impact phytoplankton populations: A modelling experiment (2022) Exley G, Page T, Thackerey SJ, Folkard AM, Couture RM, Hernandez RR, Cagle AE, Salk KR, Clous L, Whittaker P, Chipps M, Armstron A. Journal of Environmental Management (324) p. 116410. https://doi.org/10.1016/j.jenvman.2022.116410
- Code: https://github.com/biogeochemistry/MyLake_Windermere
- Contact : g.exley@lancaster.ac.uk
Latest updated Oct 2022