Update uniprot

build.py

@@ -262,8 +262,8 @@ def _make(
         else:
             tqdm.write(f"[{prefix}] done converting to OWL")
 
-        tqdm.write(f"[{prefix}] outputting OBO Graph JSON")
         try:
+            tqdm.write(f"[{prefix}] converting to OBO Graph JSON")
             convert(obo_path, obo_graph_json_path, merge=False, reason=False, debug=True)
             _, rv["obograph"] = _prepare_art(prefix, obo_graph_json_path, has_version, ".json.gz")
         except subprocess.CalledProcessError as e:

docs/_data/manifest.yml

@@ -1022,11 +1022,11 @@ resources:
       xrefs: 635637
   uniprot:
     nodes:
-      gzipped: true
-      iri: https://w3id.org/biopragmatics/resources/uniprot/uniprot.tsv.gz
-      path: uniprot/uniprot.tsv.gz
-      version_iri: https://w3id.org/biopragmatics/resources/uniprot/2024_05/uniprot.tsv.gz
-      version_path: uniprot/2024_05/uniprot.tsv.gz
+      gzipped: false
+      iri: https://w3id.org/biopragmatics/resources/uniprot/uniprot.tsv
+      path: uniprot/uniprot.tsv
+      version_iri: https://w3id.org/biopragmatics/resources/uniprot/2024_05/uniprot.tsv
+      version_path: uniprot/2024_05/uniprot.tsv
     obo:
       gzipped: true
       iri: https://w3id.org/biopragmatics/resources/uniprot/uniprot.obo.gz
@@ -1053,7 +1053,7 @@ resources:
       version_path: uniprot/2024_05/uniprot.sssom.tsv
     summary:
       alts: 0
-      definitions: 469043
+      definitions: 0
       parents: 0
       properties: 572214
       references: 1136558