Merge pull request #18 from biosimulators/min-presim-points

Set minimum number of presim points
biosimulators · Aug 15, 2023 · 705eeb0 · 705eeb0
2 parents 154f6d9 + 7e8cc5f
commit 705eeb0
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/biosimulators_tellurium/_version.py b/biosimulators_tellurium/_version.py
@@ -1 +1 @@
-__version__ = '0.1.39'
+__version__ = '0.1.40'
diff --git a/biosimulators_tellurium/core.py b/biosimulators_tellurium/core.py
@@ -268,6 +268,7 @@ def exec_sed_task(task, variables, preprocessed_task=None, log=None, config=None
  (sim.output_end_time - sim.output_start_time) * sim.number_of_steps + 1
 
  number_of_presim_points = round(number_of_presim_points) - sim.number_of_steps
+ number_of_presim_points = max(2, number_of_presim_points)
  road_runner.simulate(sim.initial_time, sim.output_start_time, number_of_presim_points)
 
  results = numpy.array(road_runner.simulate(sim.output_start_time, sim.output_end_time, sim.number_of_steps+1).tolist()).transpose()
@@ -310,10 +311,10 @@ def exec_sed_task(task, variables, preprocessed_task=None, log=None, config=None
 
 def get_all_tasks_from_task(task):
  ret = set()
- if type(task) == Task:
+ if isinstance(task, Task):
  ret.add(task)
  return ret
- elif type(task) == RepeatedTask:
+ elif isinstance(task, RepeatedTask):
  for sub_task in task.sub_tasks:
  submodels = get_all_tasks_from_task(sub_task.task)
  ret.update(submodels)