Merge branch 'dev' of ssh://github.com/biosimulators/Biosimulators_ut…

…ils into dev
biosimulators · Jan 1, 2021 · dd49ee0 · dd49ee0
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diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.1.26',
+    VERSION: '0.1.27',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/about.html b/docs/about.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>3. About BioSimulators utils &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>3. About BioSimulators utils &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -140,7 +140,7 @@ <h2><span class="section-number">3.5. </span>Questions and comments<a class="hea
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="_sources/about.rst.txt"

diff --git a/docs/genindex.html b/docs/genindex.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Index &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>Index &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -1860,7 +1860,7 @@ <h2 id="Z">Z</h2>
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
     </div>
 

diff --git a/docs/index.html b/docs/index.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>BioSimulators utils documentation &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>BioSimulators utils documentation &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -158,7 +158,7 @@ <h2>Contents<a class="headerlink" href="#contents" title="Permalink to this head
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="_sources/index.rst.txt"

diff --git a/docs/installation.html b/docs/installation.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>1. Installation instructions &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>1. Installation instructions &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -131,7 +131,7 @@ <h2><span class="section-number">1.2. </span>Installing the latest revision from
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="_sources/installation.rst.txt"

diff --git a/docs/py-modindex.html b/docs/py-modindex.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Python Module Index &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>Python Module Index &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -422,7 +422,7 @@ <h1>Python Module Index</h1>
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
     </div>
 

diff --git a/docs/search.html b/docs/search.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Search &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>Search &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
 
@@ -121,7 +121,7 @@ <h1 id="search-documentation">Search</h1>
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
     </div>
 

diff --git a/docs/source/biosimulators_utils.archive.html b/docs/source/biosimulators_utils.archive.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.1. biosimulators_utils.archive package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.1. biosimulators_utils.archive package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -374,7 +374,7 @@ <h2><span class="section-number">2.1.1.1. </span>Submodules<a class="headerlink"
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.archive.rst.txt"

diff --git a/docs/source/biosimulators_utils.biosimulations.html b/docs/source/biosimulators_utils.biosimulations.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.2. biosimulators_utils.biosimulations package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.2. biosimulators_utils.biosimulations package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -461,7 +461,7 @@ <h2><span class="section-number">2.1.2.1. </span>Submodules<a class="headerlink"
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.biosimulations.rst.txt"

diff --git a/docs/source/biosimulators_utils.combine.html b/docs/source/biosimulators_utils.combine.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.3. biosimulators_utils.combine package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.3. biosimulators_utils.combine package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -726,7 +726,7 @@ <h2><span class="section-number">2.1.3.1. </span>Submodules<a class="headerlink"
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.combine.rst.txt"

diff --git a/docs/source/biosimulators_utils.exec_status.html b/docs/source/biosimulators_utils.exec_status.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.4. biosimulators_utils.exec_status package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.4. biosimulators_utils.exec_status package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -504,7 +504,7 @@ <h2><span class="section-number">2.1.4.1. </span>Submodules<a class="headerlink"
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.exec_status.rst.txt"

diff --git a/docs/source/biosimulators_utils.gh_action.html b/docs/source/biosimulators_utils.gh_action.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.5. biosimulators_utils.gh_action package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.5. biosimulators_utils.gh_action package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -552,7 +552,7 @@ <h2><span class="section-number">2.1.5.1. </span>Submodules<a class="headerlink"
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.gh_action.rst.txt"

diff --git a/docs/source/biosimulators_utils.html b/docs/source/biosimulators_utils.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2. biosimulators_utils package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2. biosimulators_utils package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -768,7 +768,7 @@ <h2><span class="section-number">2.2. </span>Submodules<a class="headerlink" hre
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.rst.txt"

diff --git a/docs/source/biosimulators_utils.kisao.html b/docs/source/biosimulators_utils.kisao.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.6. biosimulators_utils.kisao package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.6. biosimulators_utils.kisao package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -204,7 +204,7 @@ <h2><span class="section-number">2.1.6.1. </span>Submodules<a class="headerlink"
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.kisao.rst.txt"

diff --git a/docs/source/biosimulators_utils.plot.html b/docs/source/biosimulators_utils.plot.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.7. biosimulators_utils.plot package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.7. biosimulators_utils.plot package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -222,7 +222,7 @@ <h2><span class="section-number">2.1.7.1. </span>Submodules<a class="headerlink"
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.plot.rst.txt"

diff --git a/docs/source/biosimulators_utils.report.html b/docs/source/biosimulators_utils.report.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.8. biosimulators_utils.report package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.8. biosimulators_utils.report package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -371,7 +371,7 @@ <h2><span class="section-number">2.1.8.1. </span>Submodules<a class="headerlink"
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.report.rst.txt"

diff --git a/docs/source/biosimulators_utils.sedml.html b/docs/source/biosimulators_utils.sedml.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.9. biosimulators_utils.sedml package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.9. biosimulators_utils.sedml package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -2476,7 +2476,7 @@ <h2><span class="section-number">2.1.9.1. </span>Submodules<a class="headerlink"
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.sedml.rst.txt"

diff --git a/docs/source/biosimulators_utils.simulator.html b/docs/source/biosimulators_utils.simulator.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.10. biosimulators_utils.simulator package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.10. biosimulators_utils.simulator package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -591,7 +591,7 @@ <h2><span class="section-number">2.1.10.1. </span>Submodules<a class="headerlink
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.simulator.rst.txt"

diff --git a/docs/source/biosimulators_utils.simulator_registry.html b/docs/source/biosimulators_utils.simulator_registry.html
@@ -5,7 +5,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>2.1.11. biosimulators_utils.simulator_registry package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.11. biosimulators_utils.simulator_registry package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
     <script id="documentation_options" data-url_root="../" src="../_static/documentation_options.js"></script>
@@ -419,7 +419,7 @@ <h2><span class="section-number">2.1.11.1. </span>Submodules<a class="headerlink
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.simulator_registry.rst.txt"

diff --git a/docs/source/biosimulators_utils.utils.html b/docs/source/biosimulators_utils.utils.html
@@ -5,7 +5,7 @@
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-    <title>2.1.12. biosimulators_utils.utils package &#8212; BioSimulators utils 0.1.26 documentation</title>
+    <title>2.1.12. biosimulators_utils.utils package &#8212; BioSimulators utils 0.1.27 documentation</title>
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" href="../_static/alabaster.css" type="text/css" />
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@@ -332,7 +332,7 @@ <h2><span class="section-number">2.1.12.1. </span>Submodules<a class="headerlink
     <div class="clearer"></div>
   </div>
     <div class="footer">
-      &copy;2020, BioSimulators Team.
+      &copy;2021, BioSimulators Team.
 
       |
       <a href="../_sources/source/biosimulators_utils.utils.rst.txt"