1.4.0

What's included?:

• Update of truth and ground_truth iterations to instead be declared as expected_results.
• Fix to OMEX/COMBINE archive passed with SEDML to use kisao.AlgorithmSubstitutionPolicy.SAME_FRAMEWORK to prevent hybrid solver execution on otherwise "pure" ODE models.
• Updated hue configuration for Verifier visualization methods to reader-friendly values.
• Refactored documentations/demos and README content.
• Bug fixes as needed.

v1.3.0

What's new in this release?:

• Implementation of rmse for each simulator in a given comparison.
• Added a Verifier().get_compatible() method for informative call for usable simulators.
• Added a truth keyword argument for SBML simulation verifications for ground truth passing.
• Implemented the ability to parse Antimony to SBML within a given simulation submission.
• Bug fixes as needed.

v1.2.0

What's included:

• Adds export_csv method to bio_check.verifier.Verifier() for observables output generated from Verifier().get_verify_output().
• Adds two forms of visualization to Verifier(): visualize_outputs() and visualize_comparison().
• Bug fixes for SBML request handling.
• Polling timer update for internal methods.
• Other updates as needed.

v1.1.0-beta

What's included in this pre-release:

• Changes the primary tooling object filename and class name in bio_check to verifier and Verifier respectively.
• Enhanced versions of Verifier instance methods such as export_to_csv() and visualize(). (Not yet implemented)
• Introduces a more formalized testing stack with both ci.yaml and cd.yaml within a Github Actions configuration.