Releases: biosimulators/bio-check
Releases · biosimulators/bio-check
1.4.0
What's included?:
- Update of
truth
andground_truth
iterations to instead be declared asexpected_results
. - Fix to OMEX/COMBINE archive passed with SEDML to use
kisao.AlgorithmSubstitutionPolicy.SAME_FRAMEWORK
to prevent hybrid solver execution on otherwise "pure" ODE models. - Updated hue configuration for
Verifier
visualization methods to reader-friendly values. - Refactored documentations/demos and README content.
- Bug fixes as needed.
v1.3.0
What's new in this release?:
- Implementation of
rmse
for each simulator in a given comparison. - Added a
Verifier().get_compatible()
method for informative call for usable simulators. - Added a
truth
keyword argument for SBML simulation verifications for ground truth passing. - Implemented the ability to parse Antimony to SBML within a given simulation submission.
- Bug fixes as needed.
v1.2.0
What's included:
- Adds
export_csv
method tobio_check.verifier.Verifier()
for observables output generated fromVerifier().get_verify_output()
. - Adds two forms of visualization to
Verifier()
:visualize_outputs()
andvisualize_comparison()
. - Bug fixes for SBML request handling.
- Polling timer update for internal methods.
- Other updates as needed.
v1.1.0-beta
What's included in this pre-release:
- Changes the primary tooling object filename and class name in
bio_check
toverifier
andVerifier
respectively. - Enhanced versions of
Verifier
instance methods such asexport_to_csv()
andvisualize()
. (Not yet implemented) - Introduces a more formalized testing stack with both
ci.yaml
andcd.yaml
within a Github Actions configuration.