Revert the chem tests to master branch

biothings · Feb 29, 2024 · e5f0dc0 · e5f0dc0
1 parent 690aeda
commit e5f0dc0
Showing 1 changed file with 11 additions and 13 deletions.
diff --git a/tests/chem.py b/tests/chem.py
@@ -54,7 +54,6 @@ def test_getchem_with_fields(self):
         self.assertTrue("pubchem" in c)
         self.assertTrue("cid" in c["pubchem"])
 
-    @unittest.expectedFailure
     def get_getdrug(self):
         c = self.mc.getdrug("CHEMBL1308")
         self.assertEqual(c["_id"], "ZRALSGWEFCBTJO-UHFFFAOYSA-N")
@@ -65,10 +64,10 @@ def get_getdrug(self):
 
         # PubChem CID
         # not working yet
-        c = self.mc.getdrug("CID:1990")
-        self.assertEqual(c["_id"], "ZRALSGWEFCBTJO-UHFFFAOYSA-N")
-        c = self.mc.getdrug("1990")
-        self.assertEqual(c["_id"], "ZRALSGWEFCBTJO-UHFFFAOYSA-N")
+        # c = self.mc.getdrug("CID:1990")
+        # self.assertEqual(c['_id'], "ZRALSGWEFCBTJO-UHFFFAOYSA-N")
+        # c = self.mc.getdrug("1990")
+        # self.assertEqual(c['_id'], "ZRALSGWEFCBTJO-UHFFFAOYSA-N")
 
     def test_getchems(self):
         c_li = self.mc.getchems(
@@ -103,17 +102,16 @@ def test_query_chembl(self):
         self.assertEqual(len(qres["hits"]), 1)
         self.assertEqual(qres["hits"][0]["_id"], "RRUDCFGSUDOHDG-UHFFFAOYSA-N")
 
-    @unittest.expectedFailure
     def test_query_drugcentral(self):
         qres = self.mc.query("drugcentral.drug_use.contraindication.umls_cui:C0023530", fields="drugcentral", size=50)
         self.assertTrue("hits" in qres)
         self.assertEqual(len(qres["hits"]), 50)
 
         # not working yet
-        qres = self.mc.query("drugcentral.xrefs.kegg_drug:D00220")
-        self.assertTrue("hits" in qres)
-        self.assertEqual(len(qres["hits"]), 1)
-        self.assertEqual(qres["hits"][0]["_id"], "ZRALSGWEFCBTJO-UHFFFAOYSA-N")
+        # qres = self.mc.query('drugcentral.xrefs.kegg_drug:D00220')
+        # self.assertTrue('hits' in qres)
+        # self.assertEqual(len(qres['hits']), 1)
+        # self.assertEqual(qres['hits'][0]['_id'], 'ZRALSGWEFCBTJO-UHFFFAOYSA-N')
 
     def test_query_pubchem(self):
         qres = self.mc.query("pubchem.molecular_formula:C2H5NO2", fields="pubchem", size=20)
@@ -141,15 +139,15 @@ def test_query_ndc(self):
         qres = self.mc.query('ndc.productndc:"27437-051"')
         self.assertTrue("hits" in qres)
         self.assertEqual(len(qres["hits"]), 1)
-        self.assertEqual(qres["hits"][0]["_id"], "KPQZUUQMTUIKBP-UHFFFAOYSA-N")
+        # Temp disable this check till we fix the data issue
+        # self.assertEqual(qres['hits'][0]['_id'], 'KPQZUUQMTUIKBP-UHFFFAOYSA-N')
 
-    @unittest.expectedFailure
     def test_query_sider(self):
         qres = self.mc.query("sider.meddra.umls_id:C0232487", fields="sider", size=5)
         self.assertTrue("hits" in qres)
         self.assertEqual(len(qres["hits"]), 5)
         # Temp disable this check till we fix the data issue
-        self.assertEqual(qres["hits"][0]["_id"], "ZRALSGWEFCBTJO-UHFFFAOYSA-N")
+        # self.assertEqual(qres['hits'][0]['_id'], 'ZRALSGWEFCBTJO-UHFFFAOYSA-N')
 
     def test_query_unii(self):
         qres = self.mc.query("unii.unii:JU58VJ6Y3B")