Update README.md

README.md

@@ -26,16 +26,19 @@ Each directory contains its own README file:
 
 * [CHT](./CHT) - Code for running the Combined Haplotype Test
 
-* [mapping](./mapping) -Tools for correcting mapping biases
+* [mapping](./mapping) - Mappability filtering pipeline for correcting allelic mapping biases
 
 * [snp2h5](./snp2h5) - Contains snp2h5 and fasta2h5:  programs for converting
   common SNP and sequence data formats (IMPUTE, VCF and FASTA)
   to an efficient binary format, HDF5.
 
-* [example_data](./example_data) - Example data files that can be used to try out the
+* [examples](./examples) - Example data files that can be used to try out the
   Combined Haplotype Test.
 
-* [example_workflow.sh](./example_workflow.sh) - A script illustrating
+* [example_mapping_workflow.sh](./examples/example_mapping_workflow.sh) - A script illustrating
+  how each step of the Mappability Filtering Pipeline can be run. 
+
+* [example_cht_workflow.sh](./examples/example_cht_workflow.sh) - A script illustrating
   how each step of the Combined Haplotype Test workflow can be run.