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@bokulich-lab

Laboratory of Food Systems Biotechnology

FSB Lab, Institute of Food, Nutrition, and Health, D-HEST, ETH Zurich

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  1. RESCRIPt RESCRIPt Public

    REference Sequence annotation and CuRatIon Pipeline

    Python 90 26

  2. q2-fondue q2-fondue Public

    Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere

    Python 20 6

  3. q2-assembly q2-assembly Public

    QIIME 2 plugin for (meta)genome assembly.

    Python 4 12

  4. q2-moshpit q2-moshpit Public

    MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking

    Python 3 12

Repositories

Showing 10 of 30 repositories
  • nf-ducken Public

    Workflow to process amplicon meta-analysis data, from NCBI accession IDs to taxonomic diversity metrics.

    bokulich-lab/nf-ducken’s past year of commit activity
    Nextflow 3 2 44 0 Updated Oct 18, 2024
  • RESCRIPt Public

    REference Sequence annotation and CuRatIon Pipeline

    bokulich-lab/RESCRIPt’s past year of commit activity
    Python 90 BSD-3-Clause 26 17 0 Updated Oct 17, 2024
  • q2-amrfinderplus Public
    bokulich-lab/q2-amrfinderplus’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Oct 17, 2024
  • q2-viromics Public
    bokulich-lab/q2-viromics’s past year of commit activity
    Python 0 BSD-3-Clause 2 0 0 Updated Oct 17, 2024
  • moshpit-docs Public

    MOSHPIT plugin suite documentation

    bokulich-lab/moshpit-docs’s past year of commit activity
    TeX 0 BSD-3-Clause 0 0 0 Updated Oct 16, 2024
  • q2-amr Public
    bokulich-lab/q2-amr’s past year of commit activity
    Python 2 BSD-3-Clause 1 7 3 Updated Oct 4, 2024
  • q2-assembly Public

    QIIME 2 plugin for (meta)genome assembly.

    bokulich-lab/q2-assembly’s past year of commit activity
    Python 4 BSD-3-Clause 12 8 1 Updated Oct 4, 2024
  • q2-fondue Public

    Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere

    bokulich-lab/q2-fondue’s past year of commit activity
    Python 20 BSD-3-Clause 6 11 1 Updated Oct 4, 2024
  • q2-moshpit Public

    MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking

    bokulich-lab/q2-moshpit’s past year of commit activity
    Python 3 BSD-3-Clause 12 22 4 Updated Oct 3, 2024
  • FermDB Public
    bokulich-lab/FermDB’s past year of commit activity
    Python 2 BSD-3-Clause 1 0 0 Updated Sep 29, 2024
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