GlomNet: A HoVer Deep Learning Model for Glomerulus Instance Segmentation

Accepted to ISBI 2024 Read the paper here

Code based on the monai implementation of the EfficientUNet and the HoVerNet

Usage

1. Fill the cross validation file with the names of your WSIs
2. Modify the paths in training_conf_hover.py, training_conf_bin.py inf_conf_hover.py, inf_conf_bin.py
3. In run_training.py and inference.py select the correct config file
4. Train with python source/deep_learning_seg/training/run_training.py
5. Infer with python source/deep_learning_seg/inference/inference.py

Models checkpoints

Models weights to come