Fix tests (#149)

* Fix tox file

* Fix scikit-image dep

* Update pre-commit versions

* Don't fail fast

* Test with xvfb

* Use NI actions

.github/workflows/test_and_deploy.yml

@@ -22,6 +22,7 @@ jobs:
  name: ${{ matrix.os }} py${{ matrix.python-version }}
  runs-on: ${{ matrix.os }}
  strategy:
+ fail-fast: false
  matrix:
  # Run all supported Python versions on linux
  python-version: ["3.8", "3.9", "3.10"]
@@ -37,9 +38,10 @@ jobs:
  # Setup pyqt libraries
  - uses: tlambert03/setup-qt-libs@v1
  # Run tests
- - uses: brainglobe/actions/test@v1
+ - uses:  neuroinformatics-unit/actions/test@v1
  with:
  python-version: ${{ matrix.python-version }}
+ use-xvfb: true
 
  deploy:
  # this will run when you have tagged a commit, starting with "v*"

.pre-commit-config.yaml

@@ -1,10 +1,10 @@
 repos:
  - repo: https://github.com/pycqa/isort
- rev: 5.10.1
+ rev: 5.12.0
  hooks:
  - id: isort
  - repo: https://github.com/pre-commit/pre-commit-hooks
- rev: v4.3.0
+ rev: v4.4.0
  hooks:
  - id: check-docstring-first
  - id: check-executables-have-shebangs
@@ -19,10 +19,10 @@ repos:
  # not inferfere with versioning
  exclude: setup.cfg
  - repo: https://github.com/pycqa/flake8
- rev: 5.0.4
+ rev: 6.0.0
  hooks:
  - id: flake8
  - repo: https://github.com/psf/black
- rev: 22.10.0
+ rev: 22.12.0
  hooks:
  - id: black

setup.py

@@ -16,7 +16,7 @@
  "magicgui",
  "numpy",
  "qtpy",
- "skimage",
+ "scikit-image",
  "tifffile",
  "pooch>=1", # For downloading sample data
 ]

tox.ini

@@ -1,17 +1,20 @@
 # For more information about tox, see https://tox.readthedocs.io/en/latest/
 [tox]
-envlist = py{38,39}
+envlist = py{38,39,310,311}
 
 [gh-actions]
 python =
  3.8: py38
  3.9: py39
+ 3.10: py310
+ 3.11: py311
 
 [testenv]
 passenv =
  CI
  GITHUB_ACTIONS
- DISPLAY XAUTHORITY
+ DISPLAY
+ XAUTHORITY
  NUMPY_EXPERIMENTAL_ARRAY_FUNCTION
  PYVISTA_OFF_SCREEN
 deps =