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@brentp brentp released this 21 Oct 15:30
· 203 commits to master since this release
v0.0.8
b2494af

This is a major change to vcfanno that allows use of parallel chromsweep. This removes several problems (namely chromosome ordering) with chrom-sweep. See this design document for more details.

The list of changes are:

v0.0.8

  • parallel chrom-sweep (removes problems with chromosome sort order).
    • as a result, files are required to be tabix'ed.
    • the chromosome sort order is no longer important.
    • new -p flag indicates number of processes to use.
  • fix bug in SV support of CIPOS, CIENDS
  • huge speed improvement (can annotate ~30K variants/second with 10 cpus).
  • remove server and cadd support (will return soon).
  • fix bug where header is not updated.
  • respect strict when -ends is used.

Thanks to @sigven for reporting several issues that arose as a result of the major code-changes.

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