bwa-mem2 2.0 (#1034)

brewsci · Jul 17, 2020 · b6a1826 · b6a1826
1 parent 8cc2bfb
commit b6a1826
Showing 1 changed file with 10 additions and 2 deletions.
diff --git a/Formula/bwa-mem2.rb b/Formula/bwa-mem2.rb
@@ -1,8 +1,10 @@
 class BwaMem2 < Formula
   desc "The next version of bwa-mem short read aligner"
   homepage "https://github.com/bwa-mem2/bwa-mem2"
-  url "https://github.com/bwa-mem2/bwa-mem2/archive/v2.0pre1.tar.gz"
-  sha256 "8193517da7ca51b77a20508dff1c33879bf66d00a1f2d84236fca8788018fbe1"
+  url "https://github.com/bwa-mem2/bwa-mem2.git",
+      :tag      => "v2.0",
+      :revision => "cbcc183c0843d20d45c84e066177eb8d58be2f9b"
+  sha256 "2c81ad44b58af6fba2519beefd5ac1c63b81611fda522c98b68faf54f18fa445"
   head "https://github.com/bwa-mem2/bwa-mem2.git"
 
   bottle do
@@ -15,6 +17,12 @@ class BwaMem2 < Formula
   uses_from_macos "zlib"
 
   def install
+    # Fix the error: error: conflicting types for 'memset_s'
+    # See https://github.com/intel/safestringlib/issues/14
+    inreplace "ext/safestringlib/include/safe_mem_lib.h",
+      "extern errno_t memset_s",
+      "//xxx extern errno_t memset_s"
+
     system "make"
     bin.install "bwa-mem2"
   end