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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.6k 580

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 953 366

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 972 353

Repositories

Showing 10 of 1260 repositories
  • CTAT-LRF-Paper Public
    broadinstitute/CTAT-LRF-Paper’s past year of commit activity
    HTML 1 0 0 0 Updated Jul 6, 2024
  • gatk-sv Public

    A structural variation pipeline for short-read sequencing

    broadinstitute/gatk-sv’s past year of commit activity
    Python 160 BSD-3-Clause 71 68 18 Updated Jul 6, 2024
  • BCL-Examples Public

    Storehouse of Scripts to share with our API customers to assist with their interactions with BCL Orders

    broadinstitute/BCL-Examples’s past year of commit activity
    Python 1 0 0 2 Updated Jul 6, 2024
  • tgg-connect-may2024 Public
    broadinstitute/tgg-connect-may2024’s past year of commit activity
    Python 0 MIT 0 0 14 Updated Jul 6, 2024
  • cpg Public

    Cell painting gallery

    broadinstitute/cpg’s past year of commit activity
    TypeScript 2 BSD-3-Clause 3 14 6 Updated Jul 6, 2024
  • dsp-terra-workspaces-scripts Public
    broadinstitute/dsp-terra-workspaces-scripts’s past year of commit activity
    Python 0 0 0 3 Updated Jul 6, 2024
  • gnomad_qc Public
    broadinstitute/gnomad_qc’s past year of commit activity
    Jupyter Notebook 63 BSD-3-Clause 22 7 8 Updated Jul 6, 2024
  • python-cert_manager Public

    Python interface to the Sectigo Certificate Manager REST API

    broadinstitute/python-cert_manager’s past year of commit activity
    Python 35 BSD-3-Clause 21 2 3 Updated Jul 6, 2024
  • dsp-appsec-codedx-api-client-python Public

    Python API Client for Code DX

    broadinstitute/dsp-appsec-codedx-api-client-python’s past year of commit activity
    Python 3 1 0 1 Updated Jul 6, 2024
  • python-sudoers Public

    Python library for parsing a Linux sudoers file

    broadinstitute/python-sudoers’s past year of commit activity
    Python 6 BSD-3-Clause 7 2 5 Updated Jul 6, 2024
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