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@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

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  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.7k 596

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 990 371

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 1k 359

Repositories

Showing 10 of 1327 repositories
  • cms2-work Public

    Gather in one place various repos and files related to CMS2.0 work.

    broadinstitute/cms2-work’s past year of commit activity
    Python 1 Apache-2.0 3 0 0 Updated Dec 23, 2024
  • shared-workflows Public

    GitHub Action workflows that can be shared by multiple repositories

    broadinstitute/shared-workflows’s past year of commit activity
    0 BSD-3-Clause 1 3 3 Updated Dec 23, 2024
  • python-sudoers Public

    Python library for parsing a Linux sudoers file

    broadinstitute/python-sudoers’s past year of commit activity
    Python 7 BSD-3-Clause 7 2 3 Updated Dec 23, 2024
  • glama Public

    Genomic long-read analysis modules and applications

    broadinstitute/glama’s past year of commit activity
    Rust 0 BSD-3-Clause 0 0 2 Updated Dec 24, 2024
  • jump-profiling-recipe Public

    Workflow for processing cpg0016-jump profiles

    broadinstitute/jump-profiling-recipe’s past year of commit activity
    Python 2 BSD-3-Clause 6 6 2 Updated Dec 23, 2024
  • carpenter-singh-lab-standards Public
    broadinstitute/carpenter-singh-lab-standards’s past year of commit activity
    0 BSD-3-Clause 0 2 1 Updated Dec 23, 2024
  • cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    broadinstitute/cromwell’s past year of commit activity
    Scala 1,005 BSD-3-Clause 359 745 48 Updated Dec 23, 2024
  • ml4h Public
    broadinstitute/ml4h’s past year of commit activity
    Python 125 23 30 (1 issue needs help) 22 Updated Dec 23, 2024
  • juniper Public
    broadinstitute/juniper’s past year of commit activity
    Java 9 BSD-3-Clause 5 0 15 Updated Dec 23, 2024
  • rawls Public

    Rawls service for DSDE

    broadinstitute/rawls’s past year of commit activity
    Scala 26 BSD-3-Clause 4 0 11 Updated Dec 23, 2024
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