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setup.py
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setup.py
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import re
import sys
from setuptools import find_packages, setup
with open("bvas/__init__.py") as f:
for line in f:
match = re.match('^__version__ = "(.*)"$', line)
if match:
__version__ = match.group(1)
break
try:
long_description = open("README.md", encoding="utf-8").read()
except Exception as e:
sys.stderr.write("Failed to read README.md: {}\n".format(e))
sys.stderr.flush()
long_description = ""
setup(
name="bvas",
version=__version__,
description="A library for bayesian viral gwas",
long_description=long_description,
long_description_content_type="text/markdown",
packages=find_packages(include=["bvas"]),
url="https://github.com/broadinstitute/bvas",
author="Martin Jankowiak",
author_email="mjankowi@broadinstitute.org",
install_requires=[
"torch>=1.11",
"pyro-ppl>=1.8.1",
"pandas>=1.3",
"tqdm",
],
extras_require={
"test": [
"isort>=5.9",
"flake8",
"pytest>=5.0",
],
},
python_requires=">=3.8",
keywords="bayesian variable selection, viral dynamics",
license="Apache 2.0",
classifiers=[
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Operating System :: POSIX :: Linux",
"Operating System :: MacOS :: MacOS X",
"Programming Language :: Python :: 3.8",
],
)