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Speed Improvements and Rename of Variables #14

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merged 3 commits into from
Nov 2, 2023
Merged

Speed Improvements and Rename of Variables #14

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bdd320d
use map.collect for rayon too improve performance by 6%
iblacksand Nov 2, 2023
2868dc6
use map collect for ora
iblacksand Nov 2, 2023
a16b4c5
16% speed improvement and rename GSEAResult to PartialGSEAResult
iblacksand Nov 2, 2023
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84 changes: 49 additions & 35 deletions Cargo.lock
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5 changes: 2 additions & 3 deletions webgestalt_lib/Cargo.toml
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Expand Up @@ -9,12 +9,11 @@ rust-version = "1.63.0"

[dependencies]
csv = "1.3.0"
serde = { version = "1.0.188", features = ["std", "derive"] }
serde = { version = "1.0.190", features = ["std", "derive"] }
rand = { version = "0.8.5", features = ["small_rng"] }
rayon = "1.8.0"
rustc-hash = "1.1.0"
statrs = "0.16.0"
ahash = "0.8.3"
ahash = "0.8.6"

[dev-dependencies]
pretty_assertions = "1.4.0"
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6 changes: 3 additions & 3 deletions webgestalt_lib/README.md
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Expand Up @@ -11,7 +11,7 @@ Supported methods include:

## Installation

To use webgestalt_lib in your Rust project, add the following line to your `Cargo.toml`.
To use webgestalt_lib in your Rust project, add the following line to your `Cargo.toml`.

```toml
webgestalt_lib = {git = "https://github.com/bzhanglab/webgestalt_rust.git"}
Expand All @@ -23,8 +23,8 @@ If you are just interested in running an analysis, rather than develop new tools

1. Fast and correct implementations of enrichment methods
2. Full compatibility with the WebGestaltR package
- The R package provides the most reporting functionality, and project was initially created to only assist the R package with the computation aspects
- The R package provides the most reporting functionality, and project was initially created to only assist the R package with the computation aspects
3. Fast compilation times
- Every package install has to build the library from scratch, so the lower number of dependencies, the better
- Every package install has to build the library from scratch, so the lower number of dependencies, the better

This crate does not provide any data formatting, or charts to display the results of the analysis. This work has already been done by the [R package](https://github.com/bzhanglab/webgestaltr), and a limited implementation is provided by the Rust CLI. The focus for this library is purely computational.
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