Baskerville provides researchers with tools to:
- Train deep convolutional neural networks to predict regulatory activity along very long chromosome-scale DNA sequences
- Score variants according to their predicted influence on regulatory activity across the sequence and/or for specific genes.
- Annotate the specific nucleotides that drive regulatory element function.
Documentation page: https://calico.github.io/baskerville/index.html
git clone git@github.com:calico/baskerville.git
cd baskerville
pip install .
Dave Kelley (codeowner)