cicd: update precommit #666
Workflow file for this run
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| name: checks | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| name: test py${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }} | |
| AWS_DEFAULT_REGION: us-east-2 | |
| AWS_DEFAULT_OUTPUT: text | |
| DISEASE_NORM_DB_URL: http://localhost:8002 | |
| THERAPY_NORM_DB_URL: http://localhost:8002 | |
| THERAPY_TEST: true | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python3 -m pip install ".[etl,test]" | |
| - name: Build local DynamoDB | |
| run: | | |
| chmod +x ./tests/scripts/dynamodb_run.sh | |
| ./tests/scripts/dynamodb_run.sh | |
| - name: Run tests | |
| run: python3 -m pytest | |
| lint: | |
| name: lint py${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }} | |
| AWS_DEFAULT_REGION: us-east-2 | |
| AWS_DEFAULT_OUTPUT: text | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: python3 -m pip install ".[dev]" | |
| - name: Check style | |
| run: python3 -m ruff check . && ruff format --check . | |
| precommit_hooks: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| hook: | |
| - "end-of-file-fixer" | |
| - "trailing-whitespace" | |
| - "mixed-line-ending" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.12 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - uses: pre-commit/action@v3.0.1 | |
| with: | |
| extra_args: ${{ matrix.hook }} --all-files |