feat!: update models to vrs 2.0.0 community review ballot #690
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name: checks | |
on: [push, pull_request] | |
jobs: | |
test: | |
name: test py${{ matrix.python-version }} | |
runs-on: ubuntu-latest | |
env: | |
AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }} | |
AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }} | |
AWS_DEFAULT_REGION: us-east-2 | |
AWS_DEFAULT_OUTPUT: text | |
DISEASE_NORM_DB_URL: http://localhost:8002 | |
THERAPY_NORM_DB_URL: http://localhost:8002 | |
THERAPY_TEST: true | |
strategy: | |
matrix: | |
python-version: ["3.11", "3.12", "3.13"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python3 -m pip install ".[etl,test]" | |
- name: Build local DynamoDB | |
run: | | |
chmod +x ./tests/scripts/dynamodb_run.sh | |
./tests/scripts/dynamodb_run.sh | |
- name: Run tests | |
run: python3 -m pytest | |
lint: | |
name: lint py${{ matrix.python-version }} | |
runs-on: ubuntu-latest | |
env: | |
AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }} | |
AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }} | |
AWS_DEFAULT_REGION: us-east-2 | |
AWS_DEFAULT_OUTPUT: text | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.11" | |
- name: Install dependencies | |
run: python3 -m pip install ".[dev]" | |
- name: Check style | |
run: python3 -m ruff check . && ruff format --check . | |
precommit_hooks: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
hook: | |
- "end-of-file-fixer" | |
- "trailing-whitespace" | |
- "mixed-line-ending" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.12 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.12 | |
- uses: pre-commit/action@v3.0.1 | |
with: | |
extra_args: ${{ matrix.hook }} --all-files |