Merge branch 'main' into ci-test-python3-11

cancervariants · Oct 26, 2023 · 56cc2ba · 56cc2ba
2 parents 6abc9c9 + b632b56
commit 56cc2ba
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Showing 12 changed files with 2,273 additions and 733 deletions.
diff --git a/Pipfile b/Pipfile
@@ -4,16 +4,16 @@ url = "https://pypi.org/simple"
 verify_ssl = true
 
 [packages]
-pydantic = ">=1.8.2"
+pydantic = "==2.*"
 fastapi = ">=0.92.0"
 click = "*"
 uvicorn = "*"
 boto3 = "*"
-"ga4gh.vrsatile.pydantic" = ">=0.1.dev3"
+"ga4gh.vrs" = "~=2.0.0a1"
 
 [dev-packages]
 thera-py = {editable = true, path = "."}
-disease-normalizer = ">=0.3.1"
+disease-normalizer = "~=0.4.0.dev0"
 owlready2 = "*"
 rdflib = "*"
 wikibaseintegrator = ">=0.12.0"

diff --git a/setup.cfg b/setup.cfg
@@ -15,12 +15,12 @@ zip_safe = False
 include_package_data = True
 
 install_requires =
-    pydantic >=1.8.2
+    pydantic ==2.*
     fastapi >= 0.92.0
     click
     uvicorn
     boto3
-    ga4gh.vrsatile.pydantic >= 0.1.dev3
+    ga4gh.vrs ~= 2.0.0a1
 
 [options.package_data]
 therapy =
@@ -32,7 +32,7 @@ test =
     pytest-cov
 
 dev =
-    disease-normalizer >= 0.3.1
+    disease-normalizer ~= 0.4.0.dev0
     owlready2
     rdflib
     wikibaseintegrator >= 0.12.0