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fix: resolve user agent warning in wikibase #446

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merged 1 commit into from
Nov 29, 2024
Merged

fix: resolve user agent warning in wikibase #446

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7 changes: 7 additions & 0 deletions src/therapy/etl/wikidata.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2,18 +2,25 @@

import datetime
import json
import os
from pathlib import Path
from typing import Any

from tqdm import tqdm
from wags_tails import CustomData, DataSource
from wags_tails.utils.versioning import DATE_VERSION_PATTERN
from wikibaseintegrator.wbi_config import config as wbi_config
from wikibaseintegrator.wbi_helpers import execute_sparql_query

from therapy import XREF_SOURCES
from therapy.etl.base import Base, EtlError
from therapy.schemas import NamespacePrefix, RecordParams, SourceMeta, SourceName

wbi_config["USER_AGENT"] = (
os.environ.get("WIKIBASE_USER_AGENT")
or "thera_py (https://github.com/cancervariants/therapy-normalization)"
)

# Translate Wikidata keys to standardized namespaces
NAMESPACES = {
"casRegistry": NamespacePrefix.CASREGISTRY.value,
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