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@cantinilab

Machine Learning for Integrative Genomics lab

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  1. momix-notebook momix-notebook Public

    Jupyter Notebook 60 11

  2. Mowgli Mowgli Public

    Single-cell multi-omics integration using Optimal Transport

    Python 36 2

  3. HuMMuS HuMMuS Public

    Molecular interactions inference from single-cell multi-omics data

    Python 17 4

  4. scconfluence scconfluence Public

    A novel method for single-cell diagonal integration: scConfluence

    Python 10

  5. scNET scNET Public

    jupyther notebook comparing reproducibility of single-cell network inference algorithms

    Jupyter Notebook 4 2

  6. mowgli_reproducibility mowgli_reproducibility Public

    Data and scripts to reproduce experiments for Mowgli.

    Python 3 1

Repositories

Showing 10 of 14 repositories
  • stories Public

    Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein

    cantinilab/stories’s past year of commit activity
    Python 6 GPL-3.0 0 0 0 Updated Jul 30, 2024
  • scPRINT Public

    Single Cell Pretrained Regulatory network INference from Transcripts

    cantinilab/scPRINT’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 1 0 0 Updated Jul 28, 2024
  • GRnnData Public

    Awesome GRN enhanced AnnData toolkit

    cantinilab/GRnnData’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 2 Updated Jul 26, 2024
  • Mowgli Public

    Single-cell multi-omics integration using Optimal Transport

    cantinilab/Mowgli’s past year of commit activity
    Python 36 GPL-3.0 2 4 0 Updated Jul 25, 2024
  • Circe Public

    Co-accessibility network from ATAC-seq data. Python code, based on Cicero package (R).

    cantinilab/Circe’s past year of commit activity
    Python 11 AGPL-3.0 0 0 0 Updated Jul 22, 2024
  • HuMMuS Public

    Molecular interactions inference from single-cell multi-omics data

    cantinilab/HuMMuS’s past year of commit activity
    Python 17 AGPL-3.0 4 1 0 Updated Jul 16, 2024
  • scconfluence Public

    A novel method for single-cell diagonal integration: scConfluence

    cantinilab/scconfluence’s past year of commit activity
    Python 10 0 0 0 Updated Jul 13, 2024
  • stories_reproducibility Public

    STORIES: Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein

    cantinilab/stories_reproducibility’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jul 9, 2024
  • .github Public

    home page

    cantinilab/.github’s past year of commit activity
    0 0 0 0 Updated Jul 2, 2024
  • mowgli_reproducibility Public

    Data and scripts to reproduce experiments for Mowgli.

    cantinilab/mowgli_reproducibility’s past year of commit activity
    Python 3 1 0 0 Updated Apr 1, 2024

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